Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:104142051-104142971	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104131127..104132799-chr9:104142022..104143928,2	K562	blood:

Variant related genes	Relation type
FYTTD1P1	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11787626	0.80[EUR][1000 genomes]
rs11790161	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793732	0.80[EUR][1000 genomes]
rs12342385	0.80[EUR][1000 genomes]
rs17184228	0.80[EUR][1000 genomes]
rs17765053	0.80[EUR][1000 genomes]
rs17765735	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.86[EUR][1000 genomes]
rs28447257	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.86[EUR][1000 genomes]
rs41274979	0.82[EUR][1000 genomes]
rs41281029	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043065	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129942	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213740	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023079	0.80[EUR][1000 genomes]
rs73509627	0.86[EUR][1000 genomes]
rs73509628	0.86[EUR][1000 genomes]
rs7855910	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104139000-104150400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:104139000-104156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:104139200-104150600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:104139200-104151400	Weak transcription	Osteobl	bone
6	chr9:104139400-104142400	Weak transcription	NHEK	skin
7	chr9:104139400-104146600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:104139400-104149800	Weak transcription	HSMM	muscle
9	chr9:104139400-104151600	Weak transcription	NH-A	brain
10	chr9:104139800-104142400	Weak transcription	A549	lung
11	chr9:104142200-104143000	Enhancers	HepG2	liver
12	chr9:104142200-104143200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:104142200-104144600	Transcr. at gene 5' and 3'	Liver	Liver
14	chr9:104142200-104145000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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