Variant report

Variant	rs56043065
Chromosome Location	chr9:104114947-104114948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104114762..104117661-chr9:104119094..104121364,2	K562	blood:

Variant related genes	Relation type
ENSG00000230328	Chromatin interaction
ENSG00000236763	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11787626	0.83[EUR][1000 genomes]
rs11790161	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793732	0.83[EUR][1000 genomes]
rs12342385	0.83[EUR][1000 genomes]
rs17184228	0.83[EUR][1000 genomes]
rs17764774	0.82[EUR][1000 genomes]
rs17765053	0.83[EUR][1000 genomes]
rs17765735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.89[EUR][1000 genomes]
rs28447257	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.89[EUR][1000 genomes]
rs41274979	0.82[EUR][1000 genomes]
rs41281029	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	0.82[EUR][1000 genomes]
rs56129942	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198539	0.82[EUR][1000 genomes]
rs56213740	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018478	0.81[EUR][1000 genomes]
rs7023079	0.83[EUR][1000 genomes]
rs73509627	0.89[EUR][1000 genomes]
rs73509628	0.89[EUR][1000 genomes]
rs7855910	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104109600-104116600	Enhancers	HepG2	liver
2	chr9:104114000-104115400	Weak transcription	Liver	Liver

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