Variant report

Variant	rs41281029
Chromosome Location	chr9:104151980-104151981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104146547..104152154-chr9:104159060..104162261,6	K562	blood:
2	chr9:104149633..104152570-chr9:104154465..104155982,2	K562	blood:
3	chr9:104148610..104154266-chr9:104158623..104161916,13	K562	blood:

Variant related genes	Relation type
ENSG00000136870	Chromatin interaction
ENSG00000136897	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11790161	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765735	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.84[EUR][1000 genomes]
rs28447257	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.84[EUR][1000 genomes]
rs56043065	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129942	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213740	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.82[EUR][1000 genomes]
rs73509628	0.82[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104139000-104156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:104144600-104156600	Weak transcription	Aorta	Aorta
4	chr9:104144800-104159800	Weak transcription	NHEK	skin
5	chr9:104145800-104152000	Weak transcription	Brain Substantia Nigra	brain
6	chr9:104146800-104159800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:104147600-104156600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:104147600-104160200	Weak transcription	Gastric	stomach
9	chr9:104147800-104152800	Weak transcription	Thymus	Thymus
10	chr9:104147800-104160000	Weak transcription	HSMMtube	muscle
11	chr9:104148000-104152600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:104148000-104157600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:104148000-104159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:104148200-104152000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:104148200-104159800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:104148400-104153800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:104148400-104156600	Weak transcription	Psoas Muscle	Psoas
18	chr9:104148600-104152600	Weak transcription	Ovary	ovary
19	chr9:104148600-104153400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:104148800-104152400	Weak transcription	Brain Germinal Matrix	brain
21	chr9:104148800-104153000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:104149000-104152000	Genic enhancers	A549	lung
23	chr9:104149000-104160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:104149000-104160000	Weak transcription	Right Ventricle	heart
25	chr9:104149200-104153600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:104149200-104157600	Weak transcription	Fetal Lung	lung
27	chr9:104149200-104160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:104149400-104153600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:104149400-104153600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:104149400-104153600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr9:104149400-104153600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:104149400-104154200	Strong transcription	Dnd41	blood
33	chr9:104149400-104158400	Weak transcription	Fetal Heart	heart
34	chr9:104149600-104153400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:104149800-104153600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:104149800-104154000	Strong transcription	HSMM	muscle
37	chr9:104150200-104153400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:104150200-104153400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:104150200-104153400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr9:104150200-104153400	Strong transcription	Fetal Muscle Leg	muscle
41	chr9:104150200-104153400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr9:104150200-104153600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:104150200-104153600	Strong transcription	Left Ventricle	heart
44	chr9:104150200-104153800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr9:104150200-104153800	Strong transcription	K562	blood
46	chr9:104150200-104154200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr9:104150200-104154400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:104150200-104158000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr9:104150200-104160000	Weak transcription	Lung	lung
50	chr9:104150400-104152000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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