Variant report

Variant	rs11791228
Chromosome Location	chr9:104145248-104145249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11790161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792290	0.88[CEU][hapmap]
rs11792975	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765053	0.88[CEU][hapmap]
rs17765735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.84[EUR][1000 genomes]
rs28447257	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.84[EUR][1000 genomes]
rs41281029	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043065	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.85[EUR][1000 genomes]
rs73509628	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104139000-104150400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:104139000-104156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:104139200-104150600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:104139200-104151400	Weak transcription	Osteobl	bone
6	chr9:104139400-104146600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:104139400-104149800	Weak transcription	HSMM	muscle
8	chr9:104139400-104151600	Weak transcription	NH-A	brain
9	chr9:104142600-104146600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:104142800-104151000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:104142800-104151000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:104143000-104150800	Weak transcription	HMEC	breast
13	chr9:104144000-104147000	Enhancers	HepG2	liver
14	chr9:104144600-104145400	Active TSS	A549	lung
15	chr9:104144600-104145600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:104144600-104145800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:104144600-104156600	Weak transcription	Aorta	Aorta
18	chr9:104144800-104151400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:104144800-104159800	Weak transcription	NHEK	skin
20	chr9:104145000-104147400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:104145000-104147800	Active TSS	Liver	Liver

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