Variant report

Variant	rs56213740
Chromosome Location	chr9:104154302-104154303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104153060..104154833-chr9:104173382..104175911,2	MCF-7	breast:
2	chr1:11967995..11968588-chr9:104154187..104154707,3	HCT-116	colon:
3	chr9:104139830..104141869-chr9:104151985..104154438,2	MCF-7	breast:
4	chr9:104070042..104072978-chr9:104153552..104156016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199347	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11790161	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765735	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.84[EUR][1000 genomes]
rs28447257	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.84[EUR][1000 genomes]
rs41281029	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043065	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.85[EUR][1000 genomes]
rs73509628	0.85[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104139000-104156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:104144600-104156600	Weak transcription	Aorta	Aorta
4	chr9:104144800-104159800	Weak transcription	NHEK	skin
5	chr9:104146800-104159800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:104147600-104156600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:104147600-104160200	Weak transcription	Gastric	stomach
8	chr9:104147800-104160000	Weak transcription	HSMMtube	muscle
9	chr9:104148000-104157600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:104148000-104159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:104148200-104159800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:104148400-104156600	Weak transcription	Psoas Muscle	Psoas
13	chr9:104149000-104160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:104149000-104160000	Weak transcription	Right Ventricle	heart
15	chr9:104149200-104157600	Weak transcription	Fetal Lung	lung
16	chr9:104149200-104160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:104149400-104158400	Weak transcription	Fetal Heart	heart
18	chr9:104150200-104154400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:104150200-104158000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:104150200-104160000	Weak transcription	Lung	lung
21	chr9:104150600-104159800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:104150800-104155400	Weak transcription	Fetal Brain Male	brain
23	chr9:104150800-104158400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:104150800-104159200	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:104150800-104159800	Weak transcription	Brain Angular Gyrus	brain
26	chr9:104151000-104159800	Weak transcription	Fetal Stomach	stomach
27	chr9:104151200-104159800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:104151200-104160000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:104151400-104160000	Weak transcription	Colonic Mucosa	Colon
30	chr9:104151600-104160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:104151800-104160200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:104152000-104156600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:104152400-104159600	Weak transcription	HUVEC	blood vessel
34	chr9:104152800-104154800	Weak transcription	Fetal Brain Female	brain
35	chr9:104152800-104156600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr9:104153000-104157800	Weak transcription	Hela-S3	cervix
37	chr9:104153000-104159400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:104153200-104154800	Weak transcription	Brain Germinal Matrix	brain
39	chr9:104153200-104155000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:104153200-104155000	Weak transcription	Adipose Nuclei	Adipose
41	chr9:104153200-104155200	Weak transcription	Fetal Kidney	kidney
42	chr9:104153200-104155200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:104153200-104156400	Weak transcription	HMEC	breast
44	chr9:104153200-104157800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr9:104153200-104158200	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:104153200-104158400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:104153200-104158600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:104153200-104158600	Weak transcription	Brain Anterior Caudate	brain
49	chr9:104153200-104158800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr9:104153200-104159400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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