Variant report

Variant	rs56129942
Chromosome Location	chr9:104159177-104159178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104130853..104133912-chr9:104158398..104162011,4	K562	blood:
2	chr9:104159029..104163428-chr9:104247830..104250587,4	K562	blood:
3	chr9:104156777..104159647-chr9:104161503..104163892,2	K562	blood:
4	chr9:104128710..104133912-chr9:104158398..104162224,6	K562	blood:

Variant related genes	Relation type
ENSG00000165152	Chromatin interaction
ENSG00000136881	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11790161	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765735	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.84[EUR][1000 genomes]
rs28447257	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.84[EUR][1000 genomes]
rs41281029	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043065	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.85[EUR][1000 genomes]
rs73509628	0.85[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104144800-104159800	Weak transcription	NHEK	skin
3	chr9:104146800-104159800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:104147600-104160200	Weak transcription	Gastric	stomach
5	chr9:104147800-104160000	Weak transcription	HSMMtube	muscle
6	chr9:104148000-104159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:104148200-104159800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:104149000-104160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:104149000-104160000	Weak transcription	Right Ventricle	heart
10	chr9:104149200-104160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:104150200-104160000	Weak transcription	Lung	lung
12	chr9:104150600-104159800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:104150800-104159200	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:104150800-104159800	Weak transcription	Brain Angular Gyrus	brain
15	chr9:104151000-104159800	Weak transcription	Fetal Stomach	stomach
16	chr9:104151200-104159800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr9:104151200-104160000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:104151400-104160000	Weak transcription	Colonic Mucosa	Colon
19	chr9:104151600-104160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:104151800-104160200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:104152400-104159600	Weak transcription	HUVEC	blood vessel
22	chr9:104153000-104159400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:104153200-104159400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:104153200-104159400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:104153200-104160000	Weak transcription	Placenta	Placenta
26	chr9:104153200-104160000	Weak transcription	Ovary	ovary
27	chr9:104153200-104160200	Weak transcription	Small Intestine	intestine
28	chr9:104153400-104159200	Weak transcription	Thymus	Thymus
29	chr9:104153400-104159400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr9:104153400-104159400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:104153400-104159400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:104153400-104159400	Weak transcription	NHLF	lung
33	chr9:104153400-104159800	Weak transcription	Brain Substantia Nigra	brain
34	chr9:104153400-104159800	Weak transcription	NH-A	brain
35	chr9:104153400-104159800	Weak transcription	NHDF-Ad	bronchial
36	chr9:104153400-104159800	Weak transcription	Osteobl	bone
37	chr9:104153600-104159200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:104153600-104159800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:104153600-104160000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr9:104153800-104159400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:104154800-104159400	ZNF genes & repeats	A549	lung
42	chr9:104155000-104159600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:104155200-104159600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:104155800-104159400	Weak transcription	Fetal Brain Male	brain
45	chr9:104155800-104159600	Weak transcription	Fetal Kidney	kidney
46	chr9:104156000-104159400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:104156400-104159600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
48	chr9:104156600-104159800	Enhancers	Liver	Liver
49	chr9:104156600-104160000	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr9:104156800-104159400	Weak transcription	Duodenum Mucosa	Duodenum

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