Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr9:104133861-104134179	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
BAAT	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11787626	0.82[EUR][1000 genomes]
rs11790161	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793732	0.82[EUR][1000 genomes]
rs12342385	0.82[EUR][1000 genomes]
rs17184228	0.82[EUR][1000 genomes]
rs17764774	0.81[EUR][1000 genomes]
rs17765053	0.82[EUR][1000 genomes]
rs17765735	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765829	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.88[EUR][1000 genomes]
rs2900307	0.88[EUR][1000 genomes]
rs41274979	0.81[EUR][1000 genomes]
rs41281029	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	0.81[EUR][1000 genomes]
rs56043065	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129942	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198539	0.81[EUR][1000 genomes]
rs56213740	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023079	0.82[EUR][1000 genomes]
rs73509627	0.88[EUR][1000 genomes]
rs73509628	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117600-104138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
3	chr9:104128600-104135600	Genic enhancers	Liver	Liver
4	chr9:104129000-104138200	Weak transcription	HSMMtube	muscle
5	chr9:104132000-104134600	Weak transcription	HepG2	liver
6	chr9:104132000-104135000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:104132000-104135000	Weak transcription	HSMM	muscle
8	chr9:104132000-104135200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:104132000-104137800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:104132600-104135000	Weak transcription	A549	lung
11	chr9:104133600-104134600	Weak transcription	K562	blood

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