Variant report

Variant	rs11787626
Chromosome Location	chr9:104092883-104092884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104091442..104093122-chr9:104095434..104097211,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-35N6.1.1-1	chr9:104092849-104093015	NONHSAT133726

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10114402	0.84[AMR][1000 genomes]
rs10521055	1.00[ASN][1000 genomes]
rs11788485	1.00[ASN][1000 genomes]
rs11790161	0.88[CEU][hapmap]
rs11791228	0.88[CEU][hapmap]
rs11792021	1.00[ASN][1000 genomes]
rs11792023	1.00[ASN][1000 genomes]
rs11792290	1.00[CEU][hapmap]
rs11792722	0.89[CEU][hapmap]
rs11793732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793965	1.00[ASN][1000 genomes]
rs12342385	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1329078	0.84[AMR][1000 genomes]
rs16920200	1.00[ASN][1000 genomes]
rs17184228	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17764774	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17765053	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17765735	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs17765829	0.83[EUR][1000 genomes]
rs1935241	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935242	1.00[ASN][1000 genomes]
rs2000166	0.89[CEU][hapmap]
rs28447257	0.82[EUR][1000 genomes]
rs2900307	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274979	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4403470	1.00[ASN][1000 genomes]
rs4416881	1.00[ASN][1000 genomes]
rs4451365	1.00[ASN][1000 genomes]
rs4474082	1.00[ASN][1000 genomes]
rs4612403	1.00[ASN][1000 genomes]
rs55658944	1.00[ASN][1000 genomes]
rs55805275	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56043065	0.83[EUR][1000 genomes]
rs56198539	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56316181	0.80[EUR][1000 genomes]
rs56363836	0.83[EUR][1000 genomes]
rs58013833	1.00[ASN][1000 genomes]
rs58772170	1.00[ASN][1000 genomes]
rs7018478	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7021563	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7023079	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73492631	1.00[ASN][1000 genomes]
rs73492632	1.00[ASN][1000 genomes]
rs73492646	1.00[ASN][1000 genomes]
rs73509627	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509628	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509629	1.00[ASN][1000 genomes]
rs7855910	0.88[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104091800-104094600	Weak transcription	HepG2	liver
2	chr9:104092000-104093800	Weak transcription	Liver	Liver

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