Variant report

Variant	rs11792023
Chromosome Location	chr9:104098698-104098699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104098017..104098827-chr9:104149700..104150287,2	K562	blood:
2	chr9:104094014..104095588-chr9:104098263..104099778,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10521055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787626	1.00[ASN][1000 genomes]
rs11788485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793965	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794505	1.00[EUR][1000 genomes]
rs16920200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	1.00[ASN][1000 genomes]
rs1935242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	1.00[ASN][1000 genomes]
rs4403470	1.00[ASN][1000 genomes]
rs4416881	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4451365	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4474082	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4612403	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55658944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56135593	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58013833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58772170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492632	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492646	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73509628	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73509629	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104095600-104101800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:104098600-104104200	Weak transcription	HepG2	liver

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