Variant report

Variant	rs4474082
Chromosome Location	chr9:104093961-104093962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10521055	1.00[ASN][1000 genomes]
rs10819918	0.96[EUR][1000 genomes]
rs11787626	1.00[ASN][1000 genomes]
rs11788485	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11789410	0.89[EUR][1000 genomes]
rs11789474	0.96[EUR][1000 genomes]
rs11790161	0.87[CEU][hapmap]
rs11791228	0.87[CEU][hapmap]
rs11791451	0.96[EUR][1000 genomes]
rs11792021	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11792023	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11792290	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11792722	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs11793965	1.00[ASN][1000 genomes]
rs16920200	1.00[ASN][1000 genomes]
rs17765053	1.00[CEU][hapmap]
rs17765735	0.86[CEU][hapmap]
rs1935241	1.00[ASN][1000 genomes]
rs1935242	1.00[ASN][1000 genomes]
rs2000166	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2900307	1.00[ASN][1000 genomes]
rs4403470	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4416881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4612403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55658944	1.00[ASN][1000 genomes]
rs56021420	0.96[EUR][1000 genomes]
rs56135593	0.91[AFR][1000 genomes]
rs58013833	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58772170	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7021563	0.88[CEU][hapmap]
rs73492631	1.00[ASN][1000 genomes]
rs73492632	1.00[ASN][1000 genomes]
rs73492646	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73509628	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73509629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855910	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104091800-104094600	Weak transcription	HepG2	liver
2	chr9:104093800-104097000	Enhancers	Liver	Liver

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