Variant report

Variant	rs56021420
Chromosome Location	chr9:104086191-104086192
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10819918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11789410	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342385	1.00[ASN][1000 genomes]
rs17184228	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17765053	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2000166	0.94[EUR][1000 genomes]
rs41274979	1.00[ASN][1000 genomes]
rs4403470	0.96[EUR][1000 genomes]
rs4416881	0.96[EUR][1000 genomes]
rs4451365	0.96[EUR][1000 genomes]
rs4474082	0.96[EUR][1000 genomes]
rs4612403	0.90[EUR][1000 genomes]
rs7023079	1.00[ASN][1000 genomes]
rs73509629	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:104075600-104088600	Weak transcription	Brain Germinal Matrix	brain
3	chr9:104080000-104089000	Weak transcription	Brain Hippocampus Middle	brain
4	chr9:104080400-104088600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:104080600-104089800	Weak transcription	Fetal Brain Female	brain
6	chr9:104083000-104089000	Weak transcription	Brain Anterior Caudate	brain
7	chr9:104083200-104086200	Enhancers	HepG2	liver
8	chr9:104084800-104087000	Enhancers	Liver	Liver
9	chr9:104085600-104086200	Enhancers	A549	lung
10	chr9:104085800-104087800	Enhancers	Fetal Intestine Large	intestine
11	chr9:104086000-104087800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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