Variant report

Variant	rs11789410
Chromosome Location	chr9:104088713-104088714
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104087366..104090145-chr9:104156238..104158604,2	K562	blood:
2	chr9:104081884..104083755-chr9:104086897..104088797,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10819918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11789474	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792722	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342385	1.00[ASN][1000 genomes]
rs17184228	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17765053	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2000166	0.88[EUR][1000 genomes]
rs41274979	1.00[ASN][1000 genomes]
rs4403470	0.89[EUR][1000 genomes]
rs4416881	0.89[EUR][1000 genomes]
rs4451365	0.89[EUR][1000 genomes]
rs4474082	0.89[EUR][1000 genomes]
rs4612403	0.83[EUR][1000 genomes]
rs56021420	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023079	1.00[ASN][1000 genomes]
rs73509629	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104080000-104089000	Weak transcription	Brain Hippocampus Middle	brain
2	chr9:104080600-104089800	Weak transcription	Fetal Brain Female	brain
3	chr9:104083000-104089000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:104086400-104089200	Weak transcription	Stomach Mucosa	stomach
5	chr9:104087200-104091800	Enhancers	HepG2	liver
6	chr9:104087400-104089000	Enhancers	Liver	Liver
7	chr9:104087800-104089400	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr9:104088000-104089400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:104088000-104089600	Enhancers	A549	lung
10	chr9:104088200-104089400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:104088200-104089400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:104088400-104088800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:104088400-104088800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:104088400-104088800	Enhancers	Pancreas	Pancrea
15	chr9:104088400-104089200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:104088400-104089200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:104088400-104089400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:104088400-104089400	Enhancers	Adipose Nuclei	Adipose
19	chr9:104088400-104089600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:104088400-104089800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:104088400-104089800	Enhancers	K562	blood
22	chr9:104088600-104088800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:104088600-104088800	Enhancers	Brain Cingulate Gyrus	brain
24	chr9:104088600-104089200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:104088600-104089400	ZNF genes & repeats	Fetal Intestine Small	intestine

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