Variant report

Variant	rs2000166
Chromosome Location	chr9:104061786-104061787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10819918	0.94[EUR][1000 genomes]
rs11789410	0.88[EUR][1000 genomes]
rs11789474	0.94[EUR][1000 genomes]
rs11791451	0.94[EUR][1000 genomes]
rs11792290	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs11792722	0.94[EUR][1000 genomes]
rs17765053	0.89[CEU][hapmap]
rs17765735	0.88[CEU][hapmap]
rs2000165	0.94[AFR][1000 genomes]
rs4403470	0.90[EUR][1000 genomes]
rs4416881	0.90[EUR][1000 genomes]
rs4451365	0.90[EUR][1000 genomes]
rs4474082	0.90[EUR][1000 genomes]
rs4612403	0.84[EUR][1000 genomes]
rs56021420	0.94[EUR][1000 genomes]
rs7021563	1.00[CEU][hapmap]
rs73509629	0.86[EUR][1000 genomes]
rs7855910	1.00[CEU][hapmap]
rs7862376	0.93[AFR][1000 genomes]
rs7865392	0.93[AFR][1000 genomes]
rs7875706	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104046000-104061800	Weak transcription	Brain Substantia Nigra	brain
2	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:104051400-104067800	Weak transcription	HepG2	liver
4	chr9:104059800-104063000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:104061600-104062000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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