Variant report

Variant	rs55947778
Chromosome Location	chr9:104095957-104095958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10521055	0.86[AFR][1000 genomes]
rs11794505	0.82[AFR][1000 genomes]
rs13284177	0.96[ASN][1000 genomes]
rs16920200	0.86[AFR][1000 genomes]
rs16920204	0.94[ASN][1000 genomes]
rs1935241	0.88[AFR][1000 genomes]
rs1935242	0.87[AFR][1000 genomes]
rs2900307	0.86[AFR][1000 genomes]
rs4404976	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs55658944	0.85[AFR][1000 genomes]
rs55786195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55952033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56257019	0.95[ASN][1000 genomes]
rs62577873	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73492631	0.87[AFR][1000 genomes]
rs73492632	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104093800-104097000	Enhancers	Liver	Liver
2	chr9:104095200-104097400	Weak transcription	HepG2	liver
3	chr9:104095600-104101800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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