Variant report

Variant	rs4404976
Chromosome Location	chr9:104093671-104093672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11792655	0.81[CHB][hapmap]
rs12553507	0.81[MEX][hapmap]
rs12683393	0.81[CHD][hapmap]
rs13284177	0.99[ASN][1000 genomes]
rs16920204	0.95[ASN][1000 genomes]
rs3780531	0.82[MEX][hapmap]
rs55786195	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs55947778	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs55952033	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56257019	0.97[ASN][1000 genomes]
rs62577873	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6479049	0.81[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4404976	FOXE1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104091800-104094600	Weak transcription	HepG2	liver
2	chr9:104092000-104093800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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