Variant report

Variant	rs16920204
Chromosome Location	chr9:104097900-104097901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11792655	0.82[CHB][hapmap]
rs13284177	0.94[ASN][1000 genomes]
rs1935240	0.80[JPT][hapmap]
rs4404976	0.95[ASN][1000 genomes]
rs55786195	0.96[ASN][1000 genomes]
rs55947778	0.94[ASN][1000 genomes]
rs55952033	0.94[ASN][1000 genomes]
rs56257019	0.92[ASN][1000 genomes]
rs62577873	0.95[ASN][1000 genomes]
rs6479049	0.81[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104095600-104101800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:104097400-104098600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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