Variant report
| Variant | rs13284177 |
|---|---|
| Chromosome Location | chr9:104093054-104093055 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:104091442..104093122-chr9:104095434..104097211,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10125731 | 0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10989462 | 0.80[JPT][hapmap] |
| rs11790209 | 0.84[JPT][hapmap] |
| rs11792655 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs12341244 | 0.80[JPT][hapmap] |
| rs12341316 | 0.80[JPT][hapmap] |
| rs12553507 | 0.81[CHD][hapmap];0.84[JPT][hapmap] |
| rs12683393 | 0.83[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12683674 | 0.82[JPT][hapmap] |
| rs12684829 | 0.84[JPT][hapmap] |
| rs13289023 | 0.80[JPT][hapmap] |
| rs1329077 | 0.85[JPT][hapmap] |
| rs1329079 | 0.85[JPT][hapmap] |
| rs13296052 | 0.80[JPT][hapmap] |
| rs1341769 | 0.84[JPT][hapmap] |
| rs16920204 | 0.94[ASN][1000 genomes] |
| rs1891219 | 0.84[JPT][hapmap] |
| rs1935240 | 0.84[JPT][hapmap] |
| rs2275683 | 0.81[CHD][hapmap];0.84[JPT][hapmap] |
| rs3780531 | 0.81[CHD][hapmap];0.84[JPT][hapmap] |
| rs3944892 | 0.80[JPT][hapmap] |
| rs4404976 | 0.99[ASN][1000 genomes] |
| rs55786195 | 0.98[ASN][1000 genomes] |
| rs55947778 | 0.96[ASN][1000 genomes] |
| rs55952033 | 0.96[ASN][1000 genomes] |
| rs56257019 | 0.96[ASN][1000 genomes] |
| rs62577873 | 0.99[ASN][1000 genomes] |
| rs6479049 | 0.81[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7023799 | 0.81[ASN][1000 genomes] |
| rs7034058 | 0.80[JPT][hapmap] |
| rs7848242 | 0.84[JPT][hapmap] |
| rs7868832 | 0.81[CHD][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap] |
| rs7869625 | 0.84[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037157 | chr9:104045761-104149233 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13284177 | FOXE1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:104091800-104094600 | Weak transcription | HepG2 | liver |
| 2 | chr9:104092000-104093800 | Weak transcription | Liver | Liver |
