Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:104078130..104078783-chr9:104150002..104150619,2	MCF-7	breast:
2	chr9:104077877..104078935-chr9:104149802..104150527,3	K562	blood:
3	chr9:104078007..104078883-chr9:104149799..104150989,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10125731	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512279	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10989469	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10989471	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11790209	0.84[ASN][1000 genomes]
rs11790501	0.93[ASN][1000 genomes]
rs11792655	0.96[ASN][1000 genomes]
rs12553507	0.95[ASN][1000 genomes]
rs12683393	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683674	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12684829	0.94[ASN][1000 genomes]
rs13284177	0.81[ASN][1000 genomes]
rs1341769	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1891219	0.84[ASN][1000 genomes]
rs1935240	0.94[ASN][1000 genomes]
rs2275683	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34553293	0.94[ASN][1000 genomes]
rs35846126	0.84[ASN][1000 genomes]
rs3780531	0.95[ASN][1000 genomes]
rs4480176	0.83[ASN][1000 genomes]
rs6479049	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040055	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7848242	0.94[ASN][1000 genomes]
rs7861116	0.98[ASN][1000 genomes]
rs7865487	0.81[EUR][1000 genomes]
rs7868832	0.95[ASN][1000 genomes]
rs7869625	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:104073800-104082600	Weak transcription	Brain Anterior Caudate	brain
3	chr9:104074200-104080800	Enhancers	Liver	Liver
4	chr9:104074400-104081200	Weak transcription	Brain Substantia Nigra	brain
5	chr9:104075400-104079600	Weak transcription	Fetal Brain Female	brain
6	chr9:104075600-104079400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:104075600-104079800	Weak transcription	Fetal Brain Male	brain
8	chr9:104075600-104081800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:104075600-104088600	Weak transcription	Brain Germinal Matrix	brain
10	chr9:104075800-104079600	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:104077200-104079000	Enhancers	A549	lung
12	chr9:104078400-104079600	Enhancers	HepG2	liver

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