Variant report

Variant	rs35846126
Chromosome Location	chr9:104069015-104069016
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104068294..104070576-chr9:104071673..104073236,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10125731	0.84[ASN][1000 genomes]
rs10512279	0.95[ASN][1000 genomes]
rs10989469	0.95[ASN][1000 genomes]
rs10989471	0.97[ASN][1000 genomes]
rs11790209	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790501	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11792655	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12553209	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12553507	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12683393	0.84[ASN][1000 genomes]
rs12683674	0.86[ASN][1000 genomes]
rs12684829	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1341769	0.93[ASN][1000 genomes]
rs1891219	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935240	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275683	0.86[ASN][1000 genomes]
rs34553293	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3780531	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4480176	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479049	0.84[ASN][1000 genomes]
rs7023799	0.84[ASN][1000 genomes]
rs7040055	0.84[ASN][1000 genomes]
rs7848242	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7861116	0.86[ASN][1000 genomes]
rs7865487	0.85[ASN][1000 genomes]
rs7868832	0.89[ASN][1000 genomes]
rs7869625	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:104064200-104069200	Weak transcription	Brain Anterior Caudate	brain
3	chr9:104068200-104071800	Weak transcription	HepG2	liver
4	chr9:104068400-104069800	Enhancers	Fetal Muscle Leg	muscle
5	chr9:104068400-104070800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:104068600-104069400	Enhancers	Fetal Brain Male	brain
7	chr9:104069000-104069800	Enhancers	Adipose Nuclei	Adipose
8	chr9:104069000-104070800	Enhancers	HMEC	breast

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