Variant report

Variant	rs1891219
Chromosome Location	chr9:104073268-104073269
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103363137..103364168-chr9:104073197..104074607,7	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10125731	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10512279	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989469	0.95[ASN][1000 genomes]
rs10989471	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs11790209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790501	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11792655	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12341244	0.81[JPT][hapmap]
rs12553209	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12553507	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12683393	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12683674	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs12684829	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1329079	0.80[JPT][hapmap]
rs1341769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1935240	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275683	0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs34553293	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35846126	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780531	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4480176	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479049	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7023799	0.84[ASN][1000 genomes]
rs7040055	0.84[ASN][1000 genomes]
rs7848242	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7861116	0.86[ASN][1000 genomes]
rs7865487	0.85[ASN][1000 genomes]
rs7868832	0.81[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7869625	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104069400-104075000	Weak transcription	Fetal Brain Male	brain
2	chr9:104069600-104074800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:104069800-104074200	Weak transcription	Adipose Nuclei	Adipose
4	chr9:104069800-104075000	Weak transcription	Brain Germinal Matrix	brain
5	chr9:104069800-104075000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:104070800-104075000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:104072000-104073600	Weak transcription	Brain Substantia Nigra	brain
8	chr9:104072200-104074200	Weak transcription	HepG2	liver
9	chr9:104072400-104075800	Enhancers	Brain Hippocampus Middle	brain
10	chr9:104072800-104073600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:104072800-104074200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:104073000-104073800	Enhancers	Brain Anterior Caudate	brain
13	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain

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