Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104080237..104082231-chr9:104083494..104085426,2	K562	blood:
2	chr9:104079834..104082653-chr9:104085574..104088091,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253041	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10125731	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10512279	0.87[ASN][1000 genomes]
rs10989469	0.87[ASN][1000 genomes]
rs10989471	0.89[ASN][1000 genomes]
rs11790209	0.86[ASN][1000 genomes]
rs11790501	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11792655	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12553507	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12683393	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12683674	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684829	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1341769	0.85[ASN][1000 genomes]
rs1891219	0.86[ASN][1000 genomes]
rs1935240	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2275683	1.00[ASN][1000 genomes]
rs34553293	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35846126	0.86[ASN][1000 genomes]
rs3780531	0.97[ASN][1000 genomes]
rs4480176	0.85[ASN][1000 genomes]
rs6479049	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023799	0.98[ASN][1000 genomes]
rs7040055	0.97[ASN][1000 genomes]
rs7848242	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7868832	0.97[ASN][1000 genomes]
rs7869625	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:104073800-104082600	Weak transcription	Brain Anterior Caudate	brain
3	chr9:104075600-104081800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:104075600-104088600	Weak transcription	Brain Germinal Matrix	brain
5	chr9:104079000-104085600	Weak transcription	A549	lung
6	chr9:104080000-104089000	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:104080400-104088600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:104080600-104089800	Weak transcription	Fetal Brain Female	brain
9	chr9:104080800-104084800	Weak transcription	Liver	Liver
10	chr9:104081200-104082200	Weak transcription	HepG2	liver

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