Variant report

Variant	rs12683674
Chromosome Location	chr9:104080332-104080333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:104080077-104080410	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104080237..104082231-chr9:104083494..104085426,2	K562	blood:
2	chr9:104079834..104082653-chr9:104085574..104088091,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253041	TF binding region
ENSG00000253041	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10125731	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10512279	0.95[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989462	0.83[JPT][hapmap]
rs10989469	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989471	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11790209	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11790501	0.94[ASN][1000 genomes]
rs11792655	0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs12341316	0.82[JPT][hapmap]
rs12553507	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12683393	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12684829	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13289023	0.82[JPT][hapmap]
rs13296052	0.82[JPT][hapmap]
rs1341769	0.95[CEU][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1891219	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1935240	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2275683	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34553293	0.96[ASN][1000 genomes]
rs35846126	0.86[ASN][1000 genomes]
rs3780531	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3944892	0.82[JPT][hapmap]
rs4480176	0.85[ASN][1000 genomes]
rs6479049	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023477	0.82[JPT][hapmap]
rs7023799	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7034058	0.82[JPT][hapmap]
rs7035407	0.83[JPT][hapmap]
rs7040055	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7848242	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7861116	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865487	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7868832	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7869625	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:104073800-104082600	Weak transcription	Brain Anterior Caudate	brain
3	chr9:104074200-104080800	Enhancers	Liver	Liver
4	chr9:104074400-104081200	Weak transcription	Brain Substantia Nigra	brain
5	chr9:104075600-104081800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:104075600-104088600	Weak transcription	Brain Germinal Matrix	brain
7	chr9:104079000-104085600	Weak transcription	A549	lung
8	chr9:104079400-104080400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:104079600-104080600	Strong transcription	Fetal Brain Female	brain
10	chr9:104080000-104089000	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:104080200-104081200	Enhancers	HepG2	liver

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