Variant report

Variant	rs12341316
Chromosome Location	chr9:104034674-104034675
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10512279	0.80[JPT][hapmap]
rs10989462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10989471	0.80[JPT][hapmap]
rs11792655	0.80[JPT][hapmap]
rs12341244	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12553507	0.85[JPT][hapmap]
rs12683367	0.98[ASN][1000 genomes]
rs12683393	0.80[JPT][hapmap]
rs12683674	0.82[JPT][hapmap]
rs12684829	0.85[JPT][hapmap]
rs13289023	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329073	0.82[CHD][hapmap]
rs1329077	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329079	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16920100	0.82[CHD][hapmap]
rs1935240	0.85[JPT][hapmap]
rs2033393	0.98[ASN][1000 genomes]
rs2033394	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs2039128	0.90[CHB][hapmap];0.87[CHD][hapmap];0.82[MKK][hapmap];0.84[ASN][1000 genomes]
rs2275683	0.85[JPT][hapmap]
rs35870850	0.98[ASN][1000 genomes]
rs3780531	0.85[JPT][hapmap]
rs3944892	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4743454	0.82[CHD][hapmap]
rs4743456	0.98[ASN][1000 genomes]
rs6479049	0.82[JPT][hapmap]
rs7023477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029850	0.84[ASN][1000 genomes]
rs7034058	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7047759	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7848242	0.84[JPT][hapmap]
rs7868832	0.85[JPT][hapmap]
rs7869625	0.84[JPT][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104031600-104034800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr9:104032000-104036600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:104032400-104037000	Weak transcription	HepG2	liver
4	chr9:104032400-104037600	Weak transcription	Fetal Brain Male	brain
5	chr9:104032400-104037800	Weak transcription	Fetal Brain Female	brain
6	chr9:104032400-104040800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:104032400-104042000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:104033000-104037400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:104033000-104037800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:104033800-104035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:104034000-104036000	Enhancers	Brain Substantia Nigra	brain
12	chr9:104034000-104036600	Weak transcription	Brain Anterior Caudate	brain
13	chr9:104034000-104036600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:104034000-104037800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:104034000-104038000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:104034400-104034800	Active TSS	Brain Hippocampus Middle	brain

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