Variant report

Variant	rs2039128
Chromosome Location	chr9:104029880-104029881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10989456	0.95[CEU][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.83[ASN][1000 genomes]
rs10989462	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs12338031	0.95[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs12341244	0.88[CHB][hapmap]
rs12341316	0.90[CHB][hapmap];0.87[CHD][hapmap];0.82[MKK][hapmap];0.84[ASN][1000 genomes]
rs12683367	0.86[ASN][1000 genomes]
rs13289023	0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1329073	0.95[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1329077	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[MKK][hapmap];0.84[ASN][1000 genomes]
rs1329079	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1329089	0.95[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs13295287	0.81[ASN][1000 genomes]
rs13296052	0.90[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs1367755	0.81[ASN][1000 genomes]
rs16920100	0.95[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap]
rs1831235	0.95[CEU][hapmap];0.84[ASN][1000 genomes]
rs2033393	0.86[ASN][1000 genomes]
rs2033394	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs35870850	0.85[ASN][1000 genomes]
rs3944892	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs4743454	0.95[CEU][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.83[ASN][1000 genomes]
rs4743456	0.86[ASN][1000 genomes]
rs7023477	0.90[CHB][hapmap];0.82[CHD][hapmap];0.84[ASN][1000 genomes]
rs7029850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032821	0.95[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7034058	0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7035407	0.90[CHB][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7044697	0.81[ASN][1000 genomes]
rs7047759	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs750662	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2039128	C9	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104027200-104031600	Weak transcription	HepG2	liver
2	chr9:104028000-104030600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:104028000-104032000	Weak transcription	Fetal Brain Female	brain

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