Variant report

Variant	rs3944892
Chromosome Location	chr9:104042008-104042009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10512279	0.80[JPT][hapmap]
rs10989462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10989471	0.80[JPT][hapmap]
rs11792655	0.80[JPT][hapmap]
rs12341244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341316	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12553507	0.85[JPT][hapmap]
rs12683367	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683393	0.80[JPT][hapmap]
rs12683674	0.82[JPT][hapmap]
rs12684829	0.85[JPT][hapmap]
rs13289023	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1329077	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1329079	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs13296052	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1935240	0.85[JPT][hapmap]
rs2033393	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033394	0.90[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs2039128	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs2275683	0.85[JPT][hapmap]
rs35870850	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780531	0.85[JPT][hapmap]
rs4743456	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479049	0.82[JPT][hapmap]
rs7023477	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7029850	0.86[ASN][1000 genomes]
rs7034058	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7035407	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7047759	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs7848242	0.84[JPT][hapmap]
rs7868832	0.85[JPT][hapmap]
rs7869625	0.84[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104038200-104054000	Weak transcription	Fetal Brain Male	brain
2	chr9:104039200-104050000	Weak transcription	HepG2	liver
3	chr9:104041400-104053000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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