Variant report

Variant	rs13289576
Chromosome Location	chr9:104950348-104950349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1165877	0.86[AFR][1000 genomes]
rs1165879	0.86[AFR][1000 genomes]
rs13289564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320162	0.86[AFR][1000 genomes]
rs320166	0.86[AFR][1000 genomes]
rs320167	0.86[AFR][1000 genomes]
rs320208	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs320209	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs320288	0.86[AFR][1000 genomes]
rs320289	0.86[AFR][1000 genomes]
rs320290	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048227	chr9:104546761-105162810	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893635	chr9:104789573-104990394	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831674	chr9:104827719-105011190	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2752272	chr9:104839357-104961860	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1052675	chr9:104868071-105042725	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv466447	chr9:104874984-104994909	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv615017	chr9:104874984-104994909	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv893642	chr9:104904454-105158032	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1051091	chr9:104907279-104979571	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv2764132	chr9:104917230-104979571	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv615019	chr9:104924323-104951839	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
12	nsv893643	chr9:104926878-104959452	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv893644	chr9:104926878-104990394	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv1040588	chr9:104929756-104979571	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv1038338	chr9:104938113-104965863	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
16	nsv521084	chr9:104938113-104977553	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv466449	chr9:104938113-104977553	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv615020	chr9:104938113-104977553	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv1043156	chr9:104938113-104979571	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv615021	chr9:104938113-104991804	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv615022	chr9:104940829-104990394	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv2755095	chr9:104940961-104965863	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	nsv1038241	chr9:104943675-105046156	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv615023	chr9:104946268-104980085	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv3513355	chr9:104948901-104953396	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3513356	chr9:104948901-104953396	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv969763	chr9:104949049-104977846	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104949600-104950400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:104950000-104950800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:104950000-104950800	Enhancers	Ovary	ovary

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