Variant report

Variant	rs13290034
Chromosome Location	chr9:7849063-7849064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11793372	0.83[AMR][1000 genomes]
rs11794705	1.00[AMR][1000 genomes]
rs11795134	1.00[AMR][1000 genomes]
rs13284554	1.00[AFR][1000 genomes]
rs13284673	1.00[AMR][1000 genomes]
rs13292289	1.00[AMR][1000 genomes]
rs13296145	1.00[AMR][1000 genomes]
rs13298437	1.00[AMR][1000 genomes]
rs13300236	1.00[AMR][1000 genomes]
rs34137408	1.00[AMR][1000 genomes]
rs34217510	1.00[AMR][1000 genomes]
rs34286161	1.00[AMR][1000 genomes]
rs35128671	1.00[AMR][1000 genomes]
rs35236138	0.83[AMR][1000 genomes]
rs35334421	1.00[AMR][1000 genomes]
rs35398230	1.00[AMR][1000 genomes]
rs35824121	0.83[AMR][1000 genomes]
rs35871642	0.83[AMR][1000 genomes]
rs35942577	1.00[AMR][1000 genomes]
rs35952115	0.83[AMR][1000 genomes]
rs66628231	1.00[AMR][1000 genomes]
rs67117057	0.83[AMR][1000 genomes]
rs7034498	0.83[AMR][1000 genomes]
rs72699843	0.83[AMR][1000 genomes]
rs9696421	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892213	chr9:7770942-7856992	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv892215	chr9:7799787-7889991	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7841000-7861200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:7849000-7849600	Enhancers	Thymus	Thymus

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