Variant report

Variant	rs35236138
Chromosome Location	chr9:7879680-7879681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11793372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11794705	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11795134	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13284673	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13290034	0.83[AMR][1000 genomes]
rs13292289	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13296145	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13298437	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13300236	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34137408	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34217510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34286161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35128671	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35334421	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35398230	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35824121	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35871642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35942577	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35952115	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66628231	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67117057	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7034498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9696421	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892215	chr9:7799787-7889991	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv466121	chr9:7856992-7889991	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613270	chr9:7856992-7889991	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv973468	chr9:7871815-7950706	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7877800-7880000	Enhancers	Fetal Thymus	thymus
2	chr9:7878800-7880200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:7879000-7881000	Enhancers	Thymus	Thymus
4	chr9:7879200-7880400	Flanking Active TSS	Dnd41	blood
5	chr9:7879200-7880800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:7879400-7879800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr9:7879400-7880000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:7879400-7880000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr9:7879400-7880200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:7879400-7880200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr9:7879400-7880200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:7879400-7880400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:7879400-7880400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:7879400-7880400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:7879600-7880000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr9:7879600-7880200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:7879600-7880200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:7879600-7880400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:7879600-7880400	Enhancers	Primary B cells from peripheral blood	blood
20	chr9:7879600-7880400	Enhancers	Primary T cells from cord blood	blood
21	chr9:7879600-7880600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:7879600-7880800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:7879600-7880800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links