Variant report

Variant	rs13292454
Chromosome Location	chr9:97995075-97995076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97986477..97988619-chr9:97995032..97997018,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13294276	0.85[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap];1.00[AFR][1000 genomes]
rs35322368	1.00[AFR][1000 genomes]
rs4647526	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97973600-98024000	Weak transcription	Gastric	stomach
2	chr9:97974000-98009400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:97978000-98008400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:97981400-98012400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:97981600-98009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:97983400-98012400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:97984600-97999600	Weak transcription	Fetal Heart	heart
8	chr9:97987200-98015400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:97987800-97999600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:97987800-98008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:97988200-98007200	Weak transcription	Fetal Lung	lung
12	chr9:97988400-98012200	Weak transcription	Fetal Kidney	kidney
13	chr9:97988600-97999600	Weak transcription	Aorta	Aorta
14	chr9:97989200-98009600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:97989200-98012400	Weak transcription	Ovary	ovary
16	chr9:97989400-97995200	Weak transcription	HSMM	muscle
17	chr9:97989400-98012400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:97989400-98013400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:97989600-98006400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:97989600-98012200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:97989800-98007400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:97989800-98011200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:97990200-98013400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:97990400-98008200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:97990400-98012600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:97990800-98001200	Weak transcription	Pancreas	Pancrea
27	chr9:97991000-98010400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:97991200-98024000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:97992200-98003800	Weak transcription	NHLF	lung
30	chr9:97992200-98004600	Weak transcription	HepG2	liver
31	chr9:97992400-98008800	Weak transcription	Right Ventricle	heart
32	chr9:97992600-98002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:97992600-98013400	Weak transcription	Liver	Liver
34	chr9:97993000-98008400	Weak transcription	Adipose Nuclei	Adipose
35	chr9:97993200-98008400	Weak transcription	Spleen	Spleen
36	chr9:97993800-98000400	Weak transcription	Fetal Intestine Small	intestine
37	chr9:97993800-98008800	Weak transcription	Lung	lung
38	chr9:97994000-98006200	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:97994200-98001200	Weak transcription	Fetal Stomach	stomach
40	chr9:97994200-98011400	Weak transcription	Hela-S3	cervix
41	chr9:97994400-97997800	Strong transcription	Primary T cells from cord blood	blood
42	chr9:97994600-98002200	Weak transcription	Esophagus	oesophagus
43	chr9:97994600-98006200	Weak transcription	Fetal Intestine Large	intestine
44	chr9:97994600-98008200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:97994600-98008400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:97994800-98002000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr9:97994800-98008000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:97994800-98011200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:97994800-98017200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:97995000-97995200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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