Variant report

Variant	rs13294276
Chromosome Location	chr9:97860096-97860097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97850891..97852903-chr9:97858456..97861126,2	K562	blood:
2	chr9:97676581..97686973-chr9:97850461..97860722,21	MCF-7	breast:
3	chr9:97817856..97820045-chr9:97858304..97860840,2	MCF-7	breast:
4	chr9:97765900..97771029-chr9:97855530..97860219,8	MCF-7	breast:
5	chr9:97851403..97855354-chr9:97856847..97861126,5	K562	blood:
6	chr9:97763635..97773461-chr9:97847821..97861280,36	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12684404	1.00[TSI][hapmap]
rs13292454	0.85[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap];1.00[AFR][1000 genomes]
rs35322368	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7871699	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:97838000-97871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr9:97841200-97864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:97844000-97898400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:97846000-97861600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:97846200-97880000	Weak transcription	Primary B cells from cord blood	blood
8	chr9:97847600-97878400	Weak transcription	Dnd41	blood
9	chr9:97849200-97863800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:97849800-97864600	Enhancers	Psoas Muscle	Psoas
11	chr9:97850000-97862000	Weak transcription	Hela-S3	cervix
12	chr9:97853800-97860400	Weak transcription	Liver	Liver
13	chr9:97854200-97862200	Weak transcription	Aorta	Aorta
14	chr9:97854200-97862200	Weak transcription	HepG2	liver
15	chr9:97854200-97862400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:97854800-97860200	Genic enhancers	Stomach Smooth Muscle	stomach
17	chr9:97855000-97867800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:97855200-97876800	Weak transcription	GM12878-XiMat	blood
19	chr9:97855400-97860800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:97855400-97862200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:97855400-97865400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:97855400-97884800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:97855600-97862200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:97855600-97862400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:97855600-97862800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:97855600-97863200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:97855600-97865400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:97855600-97876400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr9:97855600-97878600	Weak transcription	Stomach Mucosa	stomach
30	chr9:97855800-97861600	Weak transcription	HMEC	breast
31	chr9:97856200-97860800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:97856200-97861000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:97856200-97862000	Weak transcription	NHDF-Ad	bronchial
34	chr9:97856200-97862200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr9:97856200-97862200	Weak transcription	Osteobl	bone
36	chr9:97856200-97872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:97856400-97860400	Strong transcription	Fetal Intestine Small	intestine
38	chr9:97856400-97862600	Genic enhancers	Right Ventricle	heart
39	chr9:97856600-97860200	Weak transcription	Fetal Heart	heart
40	chr9:97856600-97860600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:97856600-97860600	Weak transcription	NH-A	brain
42	chr9:97856600-97860800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:97856600-97862200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:97856600-97862400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:97856600-97865200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:97856800-97860400	Weak transcription	Fetal Kidney	kidney
47	chr9:97857000-97860600	Weak transcription	Thymus	Thymus
48	chr9:97857000-97862200	Weak transcription	Primary T cells from cord blood	blood
49	chr9:97857200-97860600	Enhancers	Placenta	Placenta
50	chr9:97857400-97860200	Weak transcription	Fetal Thymus	thymus

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