Variant report

Variant	rs13292935
Chromosome Location	chr9:104392143-104392144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10117054	0.97[ASN][1000 genomes]
rs10121600	0.87[CHB][hapmap]
rs10123455	0.97[ASN][1000 genomes]
rs10512287	0.97[ASN][1000 genomes]
rs11791232	0.97[ASN][1000 genomes]
rs11791256	0.96[ASN][1000 genomes]
rs11792639	1.00[ASN][1000 genomes]
rs12000109	0.97[ASN][1000 genomes]
rs13284303	1.00[ASN][1000 genomes]
rs13287159	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287476	0.99[ASN][1000 genomes]
rs13289614	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298667	0.89[ASN][1000 genomes]
rs13301163	1.00[ASN][1000 genomes]
rs16920477	1.00[AFR][1000 genomes]
rs16920487	1.00[AFR][1000 genomes]
rs16920497	1.00[AFR][1000 genomes]
rs16920501	1.00[AFR][1000 genomes]
rs17197320	1.00[ASN][1000 genomes]
rs17199409	0.89[ASN][1000 genomes]
rs1853448	1.00[ASN][1000 genomes]
rs2181561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28411396	1.00[AFR][1000 genomes]
rs33945236	0.99[ASN][1000 genomes]
rs35153081	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35230964	0.97[ASN][1000 genomes]
rs35320813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35501099	1.00[ASN][1000 genomes]
rs35698290	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35728981	0.96[ASN][1000 genomes]
rs35778437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36074111	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs36091868	0.97[ASN][1000 genomes]
rs41282149	1.00[AFR][1000 genomes]
rs41282153	1.00[AFR][1000 genomes]
rs41282155	1.00[AFR][1000 genomes]
rs41306471	1.00[AFR][1000 genomes]
rs56742090	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59048832	0.83[AMR][1000 genomes]
rs61437380	0.83[AMR][1000 genomes]
rs62000403	1.00[AFR][1000 genomes]
rs71509736	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872953	1.00[AFR][1000 genomes]
rs7873986	1.00[AFR][1000 genomes]
rs9792479	0.81[AMR][1000 genomes]
rs9792648	1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs989900	1.00[AFR][1000 genomes]
rs989901	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv6642	chr9:104385959-104398737	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104382400-104392200	Weak transcription	Liver	Liver
2	chr9:104391800-104392200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr9:104392000-104392600	Enhancers	Primary monocytes fromperipheralblood	blood

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