Variant report

Variant	rs17199409
Chromosome Location	chr9:104474717-104474718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10114172	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10117054	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10121600	0.81[CHB][hapmap]
rs10123455	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10512287	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11791232	0.89[ASN][1000 genomes]
rs11791256	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11792639	0.89[ASN][1000 genomes]
rs11793731	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12000109	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12000607	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13284303	0.89[ASN][1000 genomes]
rs13287159	0.89[ASN][1000 genomes]
rs13287476	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13289614	0.89[ASN][1000 genomes]
rs13292935	0.89[ASN][1000 genomes]
rs13298667	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301163	0.89[ASN][1000 genomes]
rs1415644	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1572563	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17197320	0.89[ASN][1000 genomes]
rs17200616	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1832333	1.00[CEU][hapmap]
rs1853448	0.89[ASN][1000 genomes]
rs2181561	0.89[ASN][1000 genomes]
rs33945236	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35153081	0.89[ASN][1000 genomes]
rs35159903	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35230964	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35320813	0.89[ASN][1000 genomes]
rs35501099	0.89[ASN][1000 genomes]
rs35698290	0.89[ASN][1000 genomes]
rs35728981	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35778437	0.89[ASN][1000 genomes]
rs36074111	0.86[ASN][1000 genomes]
rs36091868	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62582208	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71509736	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104473800-104478000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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