Variant report

Variant	rs13293998
Chromosome Location	chr9:73488564-73488565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12000979	0.95[ASN][1000 genomes]
rs13283806	0.94[ASN][1000 genomes]
rs13289287	0.83[ASN][1000 genomes]
rs13290594	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1337010	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1361028	0.83[ASN][1000 genomes]
rs3812530	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9792446	0.96[ASN][1000 genomes]
rs9792690	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73488000-73489800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:73488200-73488800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:73488200-73490000	Enhancers	HSMM	muscle
4	chr9:73488400-73488600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:73488400-73488600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:73488400-73488800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr9:73488400-73489400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:73488400-73489600	Enhancers	NHDF-Ad	bronchial
9	chr9:73488400-73489800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:73488400-73494000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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