Variant report

Variant	rs1337010
Chromosome Location	chr9:73486034-73486035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12000979	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13283806	0.91[ASN][1000 genomes]
rs13289287	0.81[ASN][1000 genomes]
rs13290594	0.95[ASN][1000 genomes]
rs13293998	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1361028	0.81[ASN][1000 genomes]
rs3812530	0.90[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9792446	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9792690	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73484200-73488200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73484200-73488200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:73484200-73488200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:73484200-73488400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:73484400-73487600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:73485400-73486600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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