Variant report

Variant	rs13295862
Chromosome Location	chr9:97904344-97904345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10115247	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10739992	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10739993	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761377	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821451	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821453	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821454	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821455	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993490	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17686583	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1979022	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2031599	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2166402	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282216	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2297596	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2297597	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2404457	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3277	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34045846	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34532504	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3737142	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3780561	0.91[EUR][1000 genomes]
rs3780562	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3780564	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3780567	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3780568	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824486	0.92[EUR][1000 genomes]
rs3844341	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3852402	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4647382	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4647443	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4647459	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4647462	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4647475	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4647528	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4647529	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4647534	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4647554	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4647558	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744446	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744451	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744454	0.81[AMR][1000 genomes]
rs6479601	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7019043	0.85[EUR][1000 genomes]
rs7023007	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027204	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7034538	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7850958	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7854570	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7872648	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874310	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs879492	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs881791	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs963774	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97875600-97906000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97887400-97916400	Weak transcription	Thymus	Thymus
3	chr9:97890000-97906600	Weak transcription	Right Ventricle	heart
4	chr9:97890000-97919600	Weak transcription	Hela-S3	cervix
5	chr9:97890000-97928000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:97893800-97904800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:97893800-97905400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:97893800-97905800	Weak transcription	Osteobl	bone
9	chr9:97893800-97906400	Weak transcription	Ovary	ovary
10	chr9:97893800-97912600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:97893800-97918800	Weak transcription	Gastric	stomach
12	chr9:97893800-97940400	Weak transcription	Pancreas	Pancrea
13	chr9:97894200-97906200	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:97894200-97909800	Weak transcription	A549	lung
15	chr9:97894200-97925600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:97894600-97905000	Weak transcription	Fetal Lung	lung
17	chr9:97894800-97905400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:97896000-97909800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:97896400-97910200	Weak transcription	Small Intestine	intestine
20	chr9:97896400-97918400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:97896400-97920000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:97896600-97905600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:97897000-97910000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:97897200-97905000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:97897200-97905800	Weak transcription	HepG2	liver
26	chr9:97897200-97917400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:97897200-97919400	Weak transcription	GM12878-XiMat	blood
28	chr9:97897200-97920400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:97897600-97915400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr9:97900600-97919600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:97900800-97905600	Weak transcription	Esophagus	oesophagus
32	chr9:97900800-97910600	Weak transcription	Lung	lung
33	chr9:97900800-97930800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:97901000-97905200	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:97901000-97919600	Weak transcription	Psoas Muscle	Psoas
36	chr9:97901200-97906200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:97901200-97906600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:97901200-97911200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:97901200-97919800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:97901600-97925000	Weak transcription	Fetal Intestine Large	intestine
41	chr9:97901800-97905200	Weak transcription	Fetal Intestine Small	intestine
42	chr9:97901800-97906200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:97901800-97910000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:97901800-97910200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr9:97901800-97912200	Weak transcription	Primary T cells from cord blood	blood
46	chr9:97902000-97904800	Weak transcription	Fetal Stomach	stomach
47	chr9:97902000-97904800	Weak transcription	NHEK	skin
48	chr9:97902000-97906000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr9:97902000-97910000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr9:97902000-97910200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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