Variant report

Variant	rs7034538
Chromosome Location	chr9:97952972-97952973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97906541..97908120-chr9:97951638..97953781,2	MCF-7	breast:
2	chr9:97950017..97951848-chr9:97952772..97954598,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10115247	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1011784	0.91[JPT][hapmap]
rs10739992	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10739993	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10761374	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs10761377	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821447	0.91[JPT][hapmap]
rs10821451	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821453	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821454	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821455	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993490	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13295862	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17686583	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979022	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031599	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2166402	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282216	0.86[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2297596	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2297597	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2404457	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3277	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34045846	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34532504	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737142	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3780561	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780562	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3780564	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3780567	0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3780568	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3824486	0.82[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3844341	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3852402	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4647382	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4647443	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4647459	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4647462	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4647475	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647528	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4647529	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4647534	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4647554	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4647558	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4657	0.91[JPT][hapmap]
rs4743988	0.91[JPT][hapmap]
rs4744442	0.91[JPT][hapmap]
rs4744446	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744451	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744454	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs554879	0.82[CEU][hapmap]
rs6479601	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7019043	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7023007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027204	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7042293	0.81[JPT][hapmap]
rs7042320	0.82[JPT][hapmap]
rs7046682	0.91[JPT][hapmap]
rs7850958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7854570	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7872648	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7874310	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7874388	0.91[JPT][hapmap]
rs879492	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs881791	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs963774	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97941000-97959800	Weak transcription	Pancreas	Pancrea
2	chr9:97946200-97955600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:97946200-97955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:97948800-97955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:97948800-97955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:97950400-97953000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:97950600-97953400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:97950800-97959600	Weak transcription	Gastric	stomach
9	chr9:97951400-97953000	Enhancers	Right Ventricle	heart
10	chr9:97951600-97953200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:97951800-97953000	Enhancers	Right Atrium	heart
12	chr9:97951800-97953000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:97951800-97955000	Weak transcription	Thymus	Thymus
14	chr9:97952000-97953000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:97952000-97953000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:97952000-97953000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:97952000-97953000	Enhancers	Esophagus	oesophagus
18	chr9:97952000-97953000	Enhancers	Left Ventricle	heart
19	chr9:97952000-97953000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:97952000-97953200	Enhancers	Aorta	Aorta
21	chr9:97952000-97953200	Enhancers	Ovary	ovary
22	chr9:97952000-97953200	Enhancers	NHEK	skin
23	chr9:97952000-97953600	Enhancers	Lung	lung
24	chr9:97952200-97953000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:97952200-97953000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:97952200-97953000	Enhancers	Fetal Stomach	stomach
27	chr9:97952200-97953200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:97952200-97955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:97952200-97960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:97952400-97953000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:97952400-97953000	Enhancers	Fetal Muscle Trunk	muscle
32	chr9:97952400-97953000	Enhancers	HMEC	breast
33	chr9:97952400-97953000	Enhancers	HUVEC	blood vessel
34	chr9:97952400-97953200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr9:97952400-97955400	Weak transcription	GM12878-XiMat	blood
36	chr9:97952600-97953800	Enhancers	Stomach Smooth Muscle	stomach
37	chr9:97952600-97963200	Weak transcription	Spleen	Spleen
38	chr9:97952600-97969400	Weak transcription	Fetal Intestine Small	intestine
39	chr9:97952800-97953000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr9:97952800-97953000	Enhancers	Fetal Brain Female	brain

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