Variant report

Variant	rs13296623
Chromosome Location	chr9:95301627-95301628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10820990	0.81[AMR][1000 genomes]
rs12335553	0.82[AMR][1000 genomes]
rs4302908	0.81[AMR][1000 genomes]
rs7852510	0.81[AMR][1000 genomes]
rs987554	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv982321	chr9:95301514-95302375	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13296623	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95296000-95301800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:95297400-95304600	Weak transcription	Left Ventricle	heart
3	chr9:95299400-95304200	Weak transcription	Ovary	ovary
4	chr9:95300400-95304800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:95300800-95302200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:95301000-95302000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:95301000-95302000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:95301000-95302000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:95301000-95302200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:95301400-95302000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:95301400-95303800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:95301400-95303800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:95301400-95305000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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