Variant report

Variant	rs4302908
Chromosome Location	chr9:95321641-95321642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10116241	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10117680	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10118107	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10120329	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121495	0.80[AMR][1000 genomes]
rs10123738	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10125450	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10283572	0.82[AMR][1000 genomes]
rs10429459	0.81[AMR][1000 genomes]
rs10453241	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1053441	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1053446	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1075397	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761153	0.82[AMR][1000 genomes]
rs10761154	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10761161	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761164	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820969	0.80[AMR][1000 genomes]
rs10820971	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820986	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820988	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820989	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992322	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992340	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992347	0.80[AMR][1000 genomes]
rs10992365	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992375	0.86[ASN][1000 genomes]
rs11789163	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11795122	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12335553	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12338938	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13296623	0.81[AMR][1000 genomes]
rs13301492	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13301652	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1924243	0.80[AMR][1000 genomes]
rs1924244	0.80[AMR][1000 genomes]
rs2007837	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2025388	0.82[AMR][1000 genomes]
rs2026585	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2104533	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2274966	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2296666	0.81[AMR][1000 genomes]
rs2296667	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2516567	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2761679	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2895219	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3780347	0.81[AMR][1000 genomes]
rs3927488	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4743874	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744133	0.80[AMR][1000 genomes]
rs4744134	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744136	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744139	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6479419	0.81[AMR][1000 genomes]
rs6479420	0.81[AMR][1000 genomes]
rs6479423	0.81[AMR][1000 genomes]
rs7020874	0.81[AMR][1000 genomes]
rs7023004	0.81[AMR][1000 genomes]
rs7026361	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7045409	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7047089	0.81[AMR][1000 genomes]
rs747629	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7847929	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7849788	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7849927	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850432	0.82[AMR][1000 genomes]
rs7852510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853859	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7856204	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7863049	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7863234	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7864630	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7868640	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7869742	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7872644	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7873390	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8067	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs927865	0.81[AMR][1000 genomes]
rs9299404	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs987554	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4302908	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95308600-95324000	Weak transcription	Fetal Intestine Small	intestine
2	chr9:95310800-95323600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:95319200-95323000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95320600-95324200	Weak transcription	Small Intestine	intestine
5	chr9:95320800-95321800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:95320800-95321800	Enhancers	K562	blood
7	chr9:95321000-95321800	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:95321200-95323400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:95321200-95325400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:95321400-95322000	Enhancers	Adipose Nuclei	Adipose
11	chr9:95321400-95324000	Weak transcription	Esophagus	oesophagus
12	chr9:95321600-95323400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:95321600-95323400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr9:95321600-95325400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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