Variant report

Variant	rs2026585
Chromosome Location	chr9:95324986-95324987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95324026..95325941-chr9:95326623..95329025,2	MCF-7	breast:
2	chr9:95323575..95325802-chr9:95326902..95329707,2	K562	blood:

Extended variants
information (count: 135 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10114912	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10114932	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10115222	0.83[CEU][hapmap]
rs10115290	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10116241	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10117627	0.84[EUR][1000 genomes]
rs10117680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10118107	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10118939	0.85[CEU][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120329	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10123738	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10125450	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10125587	0.81[CEU][hapmap]
rs10283572	0.87[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs10429459	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10453241	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10514815	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1053441	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1053446	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1075397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761154	0.92[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap]
rs10761155	0.88[CEU][hapmap]
rs10761158	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761163	0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820971	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10820980	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10820986	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10820988	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10820989	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820990	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820994	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821008	0.83[CEU][hapmap]
rs10992322	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10992347	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992349	0.85[CEU][hapmap]
rs10992365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992366	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992375	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992393	0.84[CEU][hapmap]
rs1121978	0.88[CEU][hapmap]
rs1121979	0.83[CEU][hapmap]
rs11788511	0.80[JPT][hapmap]
rs11788523	0.81[EUR][1000 genomes]
rs11794346	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12335553	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12336415	0.88[CEU][hapmap]
rs12338938	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12341817	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12342019	0.88[CEU][hapmap]
rs12343820	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13301492	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13301537	0.88[CEU][hapmap]
rs13301652	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535754	0.96[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1535756	0.85[CEU][hapmap]
rs1924243	0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1924244	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1980848	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2025388	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2094281	0.88[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2104533	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2274966	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2296666	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296667	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2296669	0.88[CEU][hapmap]
rs2516567	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2516568	0.80[CEU][hapmap]
rs2761678	0.80[JPT][hapmap]
rs2761681	0.83[CEU][hapmap]
rs2895219	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3739606	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3780347	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3927488	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4302908	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743873	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4743874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743875	0.84[CEU][hapmap]
rs4744133	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744134	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4744135	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744136	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4744137	0.85[CEU][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744138	0.83[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744139	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744141	0.88[CEU][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479422	0.88[CEU][hapmap]
rs6479423	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7020104	0.84[CEU][hapmap]
rs7022562	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7026361	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7027595	0.83[CEU][hapmap]
rs7029939	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7031567	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7033979	0.85[CEU][hapmap]
rs7037075	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7037194	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7043152	0.83[CEU][hapmap]
rs7045409	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7045572	0.88[CEU][hapmap]
rs747628	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs747629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7847534	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7847929	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7848391	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7849788	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7849927	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7850432	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7850528	0.88[CEU][hapmap]
rs7852510	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7852698	0.84[CEU][hapmap]
rs7853859	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7860774	0.82[EUR][1000 genomes]
rs7860786	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs7863049	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7864575	0.88[CEU][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7864630	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7865019	0.88[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7868013	0.88[CEU][hapmap]
rs7869521	0.81[CEU][hapmap]
rs7869742	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7872610	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7872644	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7873390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873397	0.84[CEU][hapmap]
rs8067	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs927865	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299404	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs9299405	0.88[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs968040	0.87[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs987553	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs987554	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2026585	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95321200-95325400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:95321600-95325400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:95321800-95326400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:95323400-95325200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr9:95323400-95325600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:95323400-95325800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:95323400-95326600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:95323400-95327800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:95323600-95325400	Weak transcription	HSMMtube	muscle
10	chr9:95323600-95326000	Enhancers	NHLF	lung
11	chr9:95323600-95326400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:95323600-95326400	Enhancers	NH-A	brain
13	chr9:95323600-95327800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:95323800-95325000	Weak transcription	Fetal Kidney	kidney
15	chr9:95323800-95325800	Enhancers	NHDF-Ad	bronchial
16	chr9:95323800-95327200	Enhancers	Osteobl	bone
17	chr9:95324000-95325000	Enhancers	Fetal Intestine Small	intestine
18	chr9:95324000-95326200	Enhancers	HSMM	muscle
19	chr9:95324000-95327000	Enhancers	Fetal Lung	lung
20	chr9:95324000-95328000	Enhancers	Fetal Stomach	stomach
21	chr9:95324000-95328200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:95324200-95325000	Enhancers	Small Intestine	intestine
23	chr9:95324200-95325400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:95324200-95328000	Enhancers	Adipose Nuclei	Adipose
25	chr9:95324400-95325400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:95324400-95325600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:95324800-95325000	Enhancers	Lung	lung
28	chr9:95324800-95325000	Enhancers	Ovary	ovary
29	chr9:95324800-95325600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:95324800-95325600	Enhancers	Right Atrium	heart
31	chr9:95324800-95325800	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:95324800-95326800	Enhancers	Psoas Muscle	Psoas
33	chr9:95324800-95327000	Enhancers	Fetal Muscle Leg	muscle

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