Variant report

Variant	rs11788511
Chromosome Location	chr9:95280607-95280608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95279396..95281425-chr9:95286686..95288458,2	K562	blood:
2	chr9:95245354..95247680-chr9:95279166..95281336,2	K562	blood:
3	chr9:95275292..95277875-chr9:95279129..95280868,3	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10114912	0.93[ASN][1000 genomes]
rs10114932	0.93[ASN][1000 genomes]
rs10115222	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10116813	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10118939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10123342	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10761155	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10761160	0.82[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10761164	0.80[JPT][hapmap]
rs10820967	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10820968	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10820980	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10820986	0.80[JPT][hapmap]
rs10992303	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10992304	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10992349	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10992366	0.93[ASN][1000 genomes]
rs1121978	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1121979	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11788523	0.85[ASN][1000 genomes]
rs11791001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11791339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11791805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792019	0.82[ASN][1000 genomes]
rs11792916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11793563	0.87[AMR][1000 genomes]
rs11793727	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11794346	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12336415	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12338938	0.80[JPT][hapmap]
rs12341817	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12342019	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs13301537	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535756	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1980848	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2026585	0.80[JPT][hapmap]
rs2094281	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2296669	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2516568	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2761678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2761681	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3824424	0.89[ASN][1000 genomes]
rs4743873	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4743874	0.80[JPT][hapmap]
rs4744137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4744138	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4744141	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62572543	0.91[ASN][1000 genomes]
rs6479422	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7027595	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7029879	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7029939	0.89[ASN][1000 genomes]
rs7030920	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7033333	0.87[AMR][1000 genomes]
rs7033979	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7042335	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7043152	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7045572	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs747628	1.00[ASN][1000 genomes]
rs7847534	1.00[ASN][1000 genomes]
rs7848399	0.85[JPT][hapmap]
rs7848472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7850528	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7864575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7865019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7868013	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7872610	0.96[ASN][1000 genomes]
rs7873397	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7874151	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9299405	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs968040	0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs987553	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95269800-95298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:95270400-95281000	Weak transcription	Thymus	Thymus
3	chr9:95270800-95284800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:95271200-95284800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:95271600-95285600	Weak transcription	Left Ventricle	heart
6	chr9:95274400-95281800	Strong transcription	Adipose Nuclei	Adipose
7	chr9:95275400-95282400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:95275600-95282200	Weak transcription	Fetal Stomach	stomach
9	chr9:95275800-95285800	Weak transcription	Fetal Intestine Small	intestine
10	chr9:95276000-95281800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:95276000-95296600	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:95276800-95284000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:95278800-95280800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:95278800-95281400	Strong transcription	Liver	Liver
15	chr9:95279000-95280800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:95279000-95280800	Strong transcription	Aorta	Aorta
17	chr9:95279000-95282000	Strong transcription	Ovary	ovary
18	chr9:95279200-95280800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:95279200-95283400	Strong transcription	Fetal Lung	lung
20	chr9:95279600-95280800	Enhancers	Osteobl	bone
21	chr9:95279600-95290400	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:95280000-95280800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:95280200-95284800	Weak transcription	Pancreas	Pancrea
24	chr9:95280400-95281800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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