Variant report

Variant	rs2516568
Chromosome Location	chr9:95187380-95187381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr9:95187330-95188475	SK-N-SH	brain:	n/a	n/a
2	NFIC	chr9:95187211-95188399	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr9:95187335-95188306	SH-SY5Y	brain:	n/a	chr9:95187462-95187471
4	GATA3	chr9:95187144-95188397	SK-N-SH	brain:	n/a	chr9:95187462-95187471
5	GATA3	chr9:95187154-95188633	SK-N-SH	brain:	n/a	chr9:95187462-95187471
6	TCF12	chr9:95187167-95188484	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
OMD	TF binding region

Extended variants
information (count: 174 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10114912	0.81[AMR][1000 genomes]
rs10114932	0.81[AMR][1000 genomes]
rs10115222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10116241	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs10116813	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[ASN][1000 genomes]
rs10118939	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs10120980	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121495	0.82[EUR][1000 genomes]
rs10123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10125474	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10283572	0.91[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs10429459	0.86[CEU][hapmap];0.91[YRI][hapmap]
rs10453241	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10514815	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs1053441	0.92[CEU][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs1053446	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10739927	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761147	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761151	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761153	0.83[EUR][1000 genomes]
rs10761154	0.91[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10761155	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10761158	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10761160	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761161	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761163	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes]
rs10761164	0.80[CEU][hapmap]
rs10820960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820964	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10820965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820967	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820968	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[ASN][1000 genomes]
rs10820969	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10820971	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs10820980	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10820986	0.84[CEU][hapmap]
rs10820990	0.87[CEU][hapmap]
rs10992273	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992280	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992291	0.81[EUR][1000 genomes]
rs10992303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992304	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[ASN][1000 genomes]
rs10992319	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992322	0.91[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992340	0.88[EUR][1000 genomes]
rs10992347	0.88[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs10992349	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10992366	0.80[AMR][1000 genomes]
rs1121978	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1121979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1133908	0.82[EUR][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11788523	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11789163	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11791339	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11792019	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792342	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11793727	0.80[ASN][1000 genomes]
rs11794346	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11795122	0.85[EUR][1000 genomes]
rs12336415	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12336884	0.92[ASN][1000 genomes]
rs12341817	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12342019	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12343820	0.83[CEU][hapmap];0.92[YRI][hapmap]
rs12348488	0.82[EUR][1000 genomes]
rs12353096	0.81[EUR][1000 genomes]
rs13301537	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1535754	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs1535756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs1924243	0.80[JPT][hapmap];0.92[YRI][hapmap]
rs1980848	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2007837	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2025388	0.91[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2026585	0.80[CEU][hapmap]
rs2094281	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs2104533	0.83[CEU][hapmap]
rs2151618	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2236341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2273862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274966	0.91[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2295941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296666	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs2296667	0.91[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2296669	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2516567	0.91[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2761677	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2761679	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2761681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895219	0.83[CEU][hapmap]
rs3739606	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs3758229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4743873	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4743874	0.80[CEU][hapmap]
rs4744133	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs4744134	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4744135	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs4744136	0.91[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744137	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs4744138	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs4744141	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6479416	0.82[EUR][1000 genomes]
rs6479417	0.92[CEU][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs6479418	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479419	0.91[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs6479420	0.82[EUR][1000 genomes]
rs6479422	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7020874	0.87[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs7022562	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7023004	0.91[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs7024190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7026361	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7027595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7029879	0.82[ASN][1000 genomes]
rs7029939	0.81[AMR][1000 genomes]
rs7030920	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[ASN][1000 genomes]
rs7031567	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs7033979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7037075	0.91[CEU][hapmap];0.95[YRI][hapmap]
rs7037194	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7040949	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7045409	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7045572	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7047089	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs710162	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs724102	0.87[CEU][hapmap]
rs747628	0.84[AMR][1000 genomes]
rs747629	0.83[CEU][hapmap]
rs7847534	0.84[AMR][1000 genomes]
rs7847929	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7848055	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7848391	0.87[CEU][hapmap]
rs7848472	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs7850432	0.91[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7850528	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853859	0.91[CEU][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7856204	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7860786	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs7863234	0.86[EUR][1000 genomes]
rs7863406	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7864575	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs7864630	0.91[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7865019	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs7867909	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7868013	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7868640	0.88[EUR][1000 genomes]
rs7869742	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7872375	0.92[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs7872610	0.84[AMR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873932	0.92[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs7874151	0.80[ASN][1000 genomes]
rs8067	0.91[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs927865	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs9299403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9299404	0.91[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9299405	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs968040	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs987553	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2516568	OGN	cis	Nerve Tibial	GTEx
rs2516568	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95173200-95188400	Weak transcription	Fetal Heart	heart
2	chr9:95183800-95189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:95184600-95187400	Active TSS	Aorta	Aorta
4	chr9:95185400-95188400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:95185400-95188800	Weak transcription	Fetal Kidney	kidney
6	chr9:95185600-95188000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:95186000-95188200	Active TSS	Ovary	ovary
8	chr9:95186200-95188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:95186200-95202200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:95186600-95187400	Enhancers	Fetal Muscle Leg	muscle
11	chr9:95186600-95189400	Enhancers	Fetal Lung	lung
12	chr9:95186800-95188000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:95186800-95188800	Enhancers	NHLF	lung
14	chr9:95186800-95189000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:95187000-95187400	Weak transcription	Adipose Nuclei	Adipose
16	chr9:95187000-95187400	Enhancers	Fetal Muscle Trunk	muscle
17	chr9:95187000-95189000	Enhancers	NHDF-Ad	bronchial
18	chr9:95187000-95189400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:95187000-95190600	Enhancers	Fetal Stomach	stomach
20	chr9:95187200-95188600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:95187200-95188800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:95187200-95189000	Enhancers	Rectal Smooth Muscle	rectum

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