Variant report

Variant	rs7863406
Chromosome Location	chr9:95053381-95053382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:95048736-95059563	K562	blood:	n/a	n/a
2	MAFK	chr9:95053139-95053397	IMR90	lung:	n/a	n/a
3	MAFK	chr9:95053174-95053404	HepG2	liver:	n/a	n/a
4	IRF1	chr9:95053165-95053611	K562	blood:	n/a	n/a
5	MAFK	chr9:95053161-95053435	Hela-S3	cervix:	n/a	n/a
6	MAFF	chr9:95053120-95053410	HepG2	liver:	n/a	n/a
7	MAFK	chr9:95053140-95053415	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95052267..95059743-chr9:95085805..95090654,23	MCF-7	breast:
2	chr9:94881159..94883688-chr9:95052555..95054095,2	K562	blood:
3	chr9:95012889..95016491-chr9:95052350..95055798,4	K562	blood:
4	chr9:95013416..95016060-chr9:95050804..95054328,4	K562	blood:
5	chr9:95051112..95065542-chr9:95079443..95091389,38	K562	blood:
6	chr9:95052930..95062724-chr9:95083607..95090664,16	MCF-7	breast:
7	chr9:95003397..95005794-chr9:95052449..95054118,2	K562	blood:

No data

Variant related genes	Relation type
IARS	TF binding region
ENSG00000188312	Chromatin interaction
ENSG00000196305	Chromatin interaction
ENSG00000198000	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10115222	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs10115290	0.89[ASN][1000 genomes]
rs10116241	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10116813	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs10117627	0.88[ASN][1000 genomes]
rs10120980	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs10121495	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10123342	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs10125474	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10429459	0.87[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10514815	0.87[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1053446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739928	0.92[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs10761147	0.87[EUR][1000 genomes]
rs10761150	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs10761151	0.88[EUR][1000 genomes]
rs10761153	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761155	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs10761156	0.81[JPT][hapmap]
rs10761158	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs10761161	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10820960	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs10820961	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs10820964	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820965	0.92[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs10820966	0.91[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs10820967	0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs10820968	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10820980	0.88[CEU][hapmap]
rs10992273	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs10992280	0.88[EUR][1000 genomes]
rs10992291	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992303	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs10992304	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs10992319	0.88[EUR][1000 genomes]
rs10992322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992340	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10992349	0.88[CEU][hapmap]
rs1121978	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs1121979	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs1133908	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152759	0.81[JPT][hapmap]
rs11789163	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11792342	0.83[EUR][1000 genomes]
rs11794346	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs11795122	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12336415	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs12341817	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs12342019	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs12343820	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12348488	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12353096	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13301537	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs1535754	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs1535756	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1924244	0.88[ASN][1000 genomes]
rs1980848	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs2007837	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2025388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2031262	0.81[JPT][hapmap]
rs2151618	0.85[EUR][1000 genomes]
rs2236341	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs2273862	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs2274966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295941	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs2296666	0.86[ASN][1000 genomes]
rs2296667	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2516567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2516568	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2761679	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2761681	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs3118008	0.91[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs3739606	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs3758229	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs3780347	0.87[ASN][1000 genomes]
rs3858096	0.91[CHB][hapmap]
rs4744133	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs4744134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744135	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs4744136	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479416	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479418	0.90[EUR][1000 genomes]
rs6479419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479420	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479422	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs6479423	0.86[ASN][1000 genomes]
rs7020874	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7022562	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7023004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7024190	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs7026361	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7027595	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs7030920	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7031567	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs7033979	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs7037075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs7037194	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7040949	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs7042335	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs7043152	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs7045409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7045572	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs710162	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7847929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7848055	0.86[EUR][1000 genomes]
rs7850432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7850528	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7853859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7856204	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7860774	0.84[ASN][1000 genomes]
rs7860786	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs7863234	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7864630	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7867909	0.89[EUR][1000 genomes]
rs7868013	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7868640	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7869742	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7872375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873397	0.91[CEU][hapmap]
rs7873932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8067	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs927865	0.86[ASN][1000 genomes]
rs9299403	0.91[CEU][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs9299404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7863406	ECM2	cis	cerebellum	SCAN
rs7863406	ZNF484	cis	parietal	SCAN
rs7863406	CENPP	cis	parietal	SCAN
rs7863406	OGN	cis	parietal	SCAN
rs7863406	OGN	cis	Nerve Tibial	GTEx
rs7863406	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs7863406	CENPP	cis	cerebellum	SCAN
rs7863406	IPPK	cis	cerebellum	SCAN
rs7863406	ZNF484	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94990200-95054000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:94991200-95053600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:94991400-95053600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:94991400-95053800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:94991400-95053800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:94991800-95053800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:94991800-95054000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:95002600-95054000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:95009000-95053800	Strong transcription	HSMM	muscle
10	chr9:95009600-95054000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:95019200-95053600	Strong transcription	HUVEC	blood vessel
12	chr9:95029800-95054000	Weak transcription	Stomach Mucosa	stomach
13	chr9:95040000-95054600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:95042200-95055200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:95042800-95054200	Weak transcription	Fetal Brain Male	brain
16	chr9:95042800-95054800	Weak transcription	Aorta	Aorta
17	chr9:95043200-95054000	Weak transcription	Small Intestine	intestine
18	chr9:95045000-95053400	Weak transcription	Psoas Muscle	Psoas
19	chr9:95046400-95054400	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:95047000-95053400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:95047000-95054000	Weak transcription	Spleen	Spleen
22	chr9:95047000-95054200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:95047200-95054400	Weak transcription	Lung	lung
24	chr9:95048000-95054000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:95048000-95054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:95048200-95053600	Weak transcription	Primary T cells from cord blood	blood
27	chr9:95048200-95054000	Weak transcription	Fetal Heart	heart
28	chr9:95048200-95054600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:95048200-95054600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:95048400-95053400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:95048400-95054000	Weak transcription	Gastric	stomach
32	chr9:95048400-95054600	Weak transcription	Brain Angular Gyrus	brain
33	chr9:95048400-95054600	Weak transcription	Colonic Mucosa	Colon
34	chr9:95048600-95053400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:95048600-95054000	Weak transcription	Fetal Intestine Small	intestine
36	chr9:95048600-95054000	Weak transcription	Right Ventricle	heart
37	chr9:95048600-95054200	Weak transcription	Pancreas	Pancrea
38	chr9:95048600-95054400	Weak transcription	Esophagus	oesophagus
39	chr9:95048600-95054400	Weak transcription	Fetal Stomach	stomach
40	chr9:95048600-95054400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr9:95048600-95054600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:95048600-95054600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:95048600-95054600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr9:95048800-95054000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr9:95048800-95054000	Weak transcription	Left Ventricle	heart
46	chr9:95049000-95054000	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:95049600-95053400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr9:95049600-95054400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:95049600-95054400	Weak transcription	Fetal Lung	lung
50	chr9:95049600-95054800	Weak transcription	Rectal Mucosa Donor 31	rectum

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