Variant report

Variant	rs10820966
Chromosome Location	chr9:95055429-95055430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:95054862-95057471	MCF10A-Er-Src	breast:	n/a	n/a
2	IRF1	chr9:95054819-95056439	K562	blood:	n/a	chr9:95055876-95055885 chr9:95056037-95056046 chr9:95055390-95055401
3	POLR2A	chr9:95048736-95059563	K562	blood:	n/a	n/a
4	FOS	chr9:95055059-95055434	MCF10A-Er-Src	breast:	n/a	n/a
5	ARID3A	chr9:95055222-95056455	K562	blood:	n/a	n/a
6	MAX	chr9:95055238-95056436	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr9:95054946-95056614	U87	brain:	n/a	n/a
8	MYC	chr9:95055063-95056589	MCF10A-Er-Src	breast:	n/a	n/a
9	SIN3A	chr9:95054861-95056869	H1-hESC	embryonic stem cell:	n/a	chr9:95056189-95056202
10	POLR2A	chr9:95054894-95058821	PBDE	blood:	n/a	n/a
11	NR2F2	chr9:95055411-95056403	K562	blood:	n/a	n/a
12	HCFC1	chr9:95054947-95057406	Hela-S3	cervix:	n/a	n/a
13	TBP	chr9:95054787-95056522	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr9:95054965-95056470	U87	brain:	n/a	n/a
15	MAZ	chr9:95055306-95056416	K562	blood:	n/a	n/a
16	EP300	chr9:95055085-95056599	K562	blood:	n/a	chr9:95055303-95055317 chr9:95055338-95055352 chr9:95056319-95056329 chr9:95056385-95056392
17	MXI1	chr9:95054755-95055441	Hela-S3	cervix:	n/a	n/a
18	MYC	chr9:95055049-95056582	A549	lung:	n/a	n/a
19	FOS	chr9:95055071-95055452	MCF10A-Er-Src	breast:	n/a	n/a
20	FOS	chr9:95055081-95055444	MCF10A-Er-Src	breast:	n/a	n/a
21	MAX	chr9:95055085-95057060	HCT-116	colon:	n/a	n/a
22	MYC	chr9:95055093-95057030	MCF10A-Er-Src	breast:	n/a	n/a
23	POLR2A	chr9:95054893-95057326	MCF10A-Er-Src	breast:	n/a	n/a
24	MXI1	chr9:95055390-95056528	GM12878	blood:	n/a	n/a
25	TBL1XR1	chr9:95054939-95056562	K562	blood:	n/a	n/a
26	TEAD4	chr9:95055263-95056428	K562	blood:	n/a	n/a
27	MAX	chr9:95055407-95056993	HCT-116	colon:	n/a	n/a
28	CHD1	chr9:95054927-95056538	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr9:95054578-95056748	PFSK-1	brain:	n/a	n/a
30	POLR2A	chr9:95054963-95056958	IMR90	lung:	n/a	n/a
31	JUN	chr9:95054606-95057061	K562	blood:	n/a	chr9:95055980-95055993
32	POLR2A	chr9:95055390-95055467	Hela-S3	cervix:	n/a	n/a
33	POLR2A	chr9:95054982-95056470	U87	brain:	n/a	n/a
34	POLR2A	chr9:95054903-95056642	U87	brain:	n/a	n/a
35	MYC	chr9:95054918-95057003	K562	blood:	n/a	n/a
36	JUND	chr9:95055216-95056392	K562	blood:	n/a	n/a
37	POLR2A	chr9:95054515-95057382	Hela-S3	cervix:	n/a	n/a
38	MYC	chr9:95055399-95056974	NB4	blood:	n/a	n/a
39	ARID3A	chr9:95055426-95056423	HepG2	liver:	n/a	n/a
40	MXI1	chr9:95054553-95057251	IMR90	lung:	n/a	n/a
41	EP300	chr9:95055073-95056382	GM12878	blood:	n/a	chr9:95055303-95055317 chr9:95055338-95055352 chr9:95056319-95056329
42	MYC	chr9:95055034-95058523	K562	blood:	n/a	n/a
43	MXI1	chr9:95054525-95057446	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95052267..95059743-chr9:95085805..95090654,23	MCF-7	breast:
2	chr9:94876692..94878485-chr9:95054878..95056695,2	MCF-7	breast:
3	chr9:95054612..95057091-chr9:95526187..95528018,2	K562	blood:
4	chr9:95012889..95016491-chr9:95052350..95055798,4	K562	blood:
5	chr9:95051112..95065542-chr9:95079443..95091389,38	K562	blood:
6	chr9:95004787..95006514-chr9:95054473..95056425,2	K562	blood:
7	chr9:95052930..95062724-chr9:95083607..95090664,16	MCF-7	breast:
8	chr9:95041855..95050591-chr9:95053528..95058799,10	MCF-7	breast:
9	chr9:94907173..94909059-chr9:95054876..95056486,2	MCF-7	breast:
10	chr9:94875730..94878651-chr9:95055011..95057658,2	K562	blood:

Variant related genes	Relation type
SNORA84	TF binding region
ENSG00000188312	Chromatin interaction
ENSG00000225511	Chromatin interaction
ENSG00000238996	Chromatin interaction
ENSG00000090054	Chromatin interaction
ENSG00000185963	Chromatin interaction
ENSG00000198000	Chromatin interaction
ENSG00000196305	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10115222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116241	0.91[CEU][hapmap]
rs10116813	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120980	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10121495	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125474	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283572	0.91[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs10453241	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs1053441	0.92[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs1053446	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10739927	0.91[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs10739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761147	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761151	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761153	0.87[EUR][1000 genomes]
rs10761154	0.92[CEU][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10761155	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[ASN][1000 genomes]
rs10761158	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10761160	0.95[ASN][1000 genomes]
rs10820960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820964	0.91[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs10820965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820967	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820968	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10820969	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10820971	0.92[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs10820980	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs10992273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992280	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992291	0.88[EUR][1000 genomes]
rs10992303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992304	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992319	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992322	0.91[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs10992347	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs10992349	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs1121978	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs1121979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1133908	0.89[EUR][1000 genomes]
rs11788523	0.92[ASN][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs11792019	0.95[ASN][1000 genomes]
rs11792342	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11794346	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs12336415	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs12336884	0.90[ASN][1000 genomes]
rs12341817	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs12342019	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs12343820	0.83[CEU][hapmap];0.92[YRI][hapmap]
rs12353096	0.88[EUR][1000 genomes]
rs13301537	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1535754	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs1535756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs1924243	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs1980848	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs2007837	0.81[EUR][1000 genomes]
rs2025388	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2151618	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274966	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs2295941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516567	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs2516568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2761677	0.98[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2761679	0.81[EUR][1000 genomes]
rs2761681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739606	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs3758229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780345	0.80[ASN][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs4743873	0.92[ASN][1000 genomes]
rs4744133	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs4744134	0.91[CEU][hapmap]
rs4744135	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs6479416	0.89[EUR][1000 genomes]
rs6479417	0.92[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs6479418	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479419	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6479420	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6479422	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs7020874	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7022562	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7023004	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7024190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026361	0.91[CEU][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs7027595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029879	0.83[ASN][1000 genomes]
rs7030920	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7031567	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs7033979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs7037075	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs7037194	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7040949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045409	0.91[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs7045451	0.85[EUR][1000 genomes]
rs7045572	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs7047089	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs710162	0.91[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs7847929	0.91[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs7848055	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848472	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7850432	0.91[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7850528	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs7853859	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs7856204	0.84[EUR][1000 genomes]
rs7860786	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs7863406	0.91[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs7867909	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868013	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs7872375	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs7873932	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs8067	0.91[CEU][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs9299403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9299404	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10820966	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95053400-95056600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:95053600-95057200	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr9:95054000-95055600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:95054000-95055600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:95054000-95056800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr9:95054200-95057200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr9:95054400-95057200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr9:95054400-95057200	Active TSS	A549	lung
9	chr9:95054600-95055600	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr9:95054600-95055600	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr9:95054600-95055600	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr9:95054600-95055600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr9:95054600-95055800	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr9:95054600-95057000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr9:95054600-95057000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:95054600-95057400	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr9:95054800-95055600	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr9:95054800-95055600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:95054800-95055600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:95054800-95055600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr9:95054800-95055600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr9:95054800-95055600	Flanking Active TSS	Liver	Liver
23	chr9:95054800-95055600	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr9:95054800-95055600	Flanking Active TSS	Colon Smooth Muscle	Colon
25	chr9:95054800-95055600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr9:95054800-95055600	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr9:95054800-95055600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr9:95054800-95055600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr9:95054800-95055600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr9:95054800-95055800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr9:95054800-95055800	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr9:95054800-95056000	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr9:95054800-95056600	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr9:95054800-95056600	Active TSS	Muscle Satellite Cultured Cells	--
35	chr9:95055000-95055600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:95055000-95055600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:95055000-95055600	Flanking Active TSS	Fetal Heart	heart
38	chr9:95055000-95055600	Weak transcription	Left Ventricle	heart
39	chr9:95055000-95055600	Weak transcription	Pancreas	Pancrea
40	chr9:95055000-95055600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:95055000-95055600	Weak transcription	Small Intestine	intestine
42	chr9:95055000-95055600	Weak transcription	Spleen	Spleen
43	chr9:95055000-95056200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:95055000-95056200	Active TSS	Fetal Muscle Trunk	muscle
45	chr9:95055000-95056400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:95055000-95056400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:95055000-95056600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:95055000-95056600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:95055000-95056600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:95055000-95056600	Active TSS	Breast Myoepithelial Primary Cells	Breast

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