Variant report

Variant	rs7023004
Chromosome Location	chr9:95098712-95098713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95094381..95096085-chr9:95097053..95098961,2	MCF-7	breast:
2	chr9:95096545..95099095-chr9:95217061..95218841,2	MCF-7	breast:
3	chr9:95087199..95090041-chr9:95094689..95100000,7	MCF-7	breast:
4	chr9:95084458..95089209-chr9:95098381..95101726,4	K562	blood:
5	chr9:95097918..95099765-chr9:95100286..95102734,2	MCF-7	breast:
6	chr9:95086268..95088088-chr9:95096654..95099068,2	K562	blood:

Variant related genes	Relation type
ENSG00000188312	Chromatin interaction
ENSG00000198000	Chromatin interaction

Extended variants
information (count: 162 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10115222	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10115290	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10116241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116813	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10117627	0.91[ASN][1000 genomes]
rs10118939	0.88[CEU][hapmap]
rs10120980	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes]
rs10121495	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10123342	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.89[LWK][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10123738	0.81[AMR][1000 genomes]
rs10125474	0.92[CEU][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10429459	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10514815	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1053446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739928	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs10761147	0.86[EUR][1000 genomes]
rs10761150	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes]
rs10761151	0.87[EUR][1000 genomes]
rs10761153	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761155	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs10761156	0.81[JPT][hapmap]
rs10761158	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10761161	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10820960	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs10820961	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.89[LWK][hapmap];0.80[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes]
rs10820964	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10820965	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs10820966	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10820967	0.83[ASW][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10820968	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10820980	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10820990	0.81[AMR][1000 genomes]
rs10992273	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs10992280	0.87[EUR][1000 genomes]
rs10992291	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992303	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs10992304	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10992319	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992322	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992340	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs10992349	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs1121978	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1121979	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1133908	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1152759	0.81[JPT][hapmap]
rs11789163	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11792342	0.85[EUR][1000 genomes]
rs11794346	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs11795122	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12335553	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12336415	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12338938	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12341817	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12342019	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12343820	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs12348488	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12353096	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13301537	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1535754	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1535756	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs1924244	0.91[ASN][1000 genomes]
rs1980848	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2007837	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025388	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2031262	0.81[JPT][hapmap]
rs2094281	0.81[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap]
rs2104533	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs2151618	0.83[EUR][1000 genomes]
rs2236341	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes]
rs2273862	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes]
rs2274966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295941	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs2296666	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2296667	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs230222	0.81[JPT][hapmap]
rs2516567	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516568	0.91[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs2761679	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2761681	0.94[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.94[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs3118008	0.96[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs331380	0.81[JPT][hapmap]
rs3739606	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs3758229	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3780347	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3858096	0.91[CHB][hapmap]
rs4302908	0.81[AMR][1000 genomes]
rs4743873	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4743874	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4744133	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs4744134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744135	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs4744136	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744137	0.88[CEU][hapmap]
rs4744138	0.81[ASW][hapmap];0.83[CEU][hapmap];0.80[MEX][hapmap]
rs6479416	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479418	0.88[EUR][1000 genomes]
rs6479419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479422	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479423	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7020874	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7022562	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap]
rs7024190	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes]
rs7026361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027595	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7030920	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7031567	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs7033979	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7037075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7037194	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap]
rs7040949	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes]
rs7042335	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7043152	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7045409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7045572	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs710162	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs747629	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs7847929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7848055	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7850432	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850528	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7852510	0.81[AMR][1000 genomes]
rs7853859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856204	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7860774	0.88[ASN][1000 genomes]
rs7860786	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.87[ASN][1000 genomes]
rs7863234	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7863406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7864630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7867909	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7868013	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7868640	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7872375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7873397	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs7873932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8067	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs927865	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9299403	0.83[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs9299404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299405	0.81[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap]
rs968040	0.81[ASW][hapmap];0.87[CEU][hapmap]
rs987554	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv1045165	chr9:95057462-95138564	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7023004	CENPP	cis	cerebellum	SCAN
rs7023004	IPPK	cis	cerebellum	SCAN
rs7023004	ECM2	cis	cerebellum	SCAN
rs7023004	OGN	cis	Nerve Tibial	GTEx
rs7023004	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs7023004	ZNF484	cis	cerebellum	SCAN
rs7023004	ZNF484	cis	parietal	SCAN
rs7023004	CENPP	cis	parietal	SCAN
rs7023004	OGN	cis	parietal	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95088600-95100000	Weak transcription	Spleen	Spleen
2	chr9:95088600-95101000	Weak transcription	Aorta	Aorta
3	chr9:95088600-95103600	Weak transcription	Esophagus	oesophagus
4	chr9:95088600-95104000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:95088600-95108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:95088800-95099800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:95088800-95100000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr9:95088800-95100000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:95088800-95100000	Weak transcription	Lung	lung
10	chr9:95088800-95100200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:95088800-95100400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:95088800-95100400	Weak transcription	Ovary	ovary
13	chr9:95088800-95102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:95088800-95102600	Weak transcription	Small Intestine	intestine
15	chr9:95088800-95103600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:95088800-95103800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:95088800-95103800	Weak transcription	Pancreas	Pancrea
18	chr9:95088800-95104000	Weak transcription	Left Ventricle	heart
19	chr9:95088800-95111200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:95088800-95111600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:95089000-95099800	Weak transcription	Primary B cells from cord blood	blood
22	chr9:95089000-95100000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:95089000-95100000	Weak transcription	Brain Angular Gyrus	brain
24	chr9:95089000-95100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:95089000-95101000	Weak transcription	Brain Substantia Nigra	brain
26	chr9:95089000-95101200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:95089000-95101400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:95089000-95102000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:95089000-95102600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr9:95089000-95103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:95089000-95103600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:95089000-95104000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:95089000-95104000	Weak transcription	HSMMtube	muscle
34	chr9:95089000-95105600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:95089000-95110200	Weak transcription	HSMM	muscle
36	chr9:95089000-95112200	Weak transcription	Adipose Nuclei	Adipose
37	chr9:95089200-95099800	Weak transcription	Brain Anterior Caudate	brain
38	chr9:95089200-95100000	Weak transcription	Liver	Liver
39	chr9:95089200-95100000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:95089200-95100000	Weak transcription	Fetal Brain Female	brain
41	chr9:95089200-95100600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:95089200-95101800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:95089200-95103800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr9:95089200-95110000	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:95089400-95098800	Weak transcription	Fetal Muscle Leg	muscle
46	chr9:95089400-95099000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:95089400-95099400	Weak transcription	Fetal Stomach	stomach
48	chr9:95089400-95099800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr9:95089400-95100400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:95089400-95100800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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