Variant report

Variant	rs10761161
Chromosome Location	chr9:95262342-95262343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95256777..95259029-chr9:95261790..95264471,2	K562	blood:
2	chr9:95261329..95263829-chr9:95264776..95266744,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10115290	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10116241	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10117627	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10120329	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10121495	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10123738	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10283572	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10429459	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10453241	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10514815	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1053441	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1053446	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739927	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10761153	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761154	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761158	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10820964	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10820969	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10820971	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10820986	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10820988	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10820990	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992291	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992322	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992340	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992347	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1121979	0.81[EUR][1000 genomes]
rs1133908	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11789163	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11792342	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11795122	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12335553	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12338938	0.80[ASN][1000 genomes]
rs12343820	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12348488	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12353096	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1535754	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1924243	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1924244	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2007837	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025388	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2104533	0.80[ASN][1000 genomes]
rs2274966	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2296666	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2296667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516567	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2516568	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2761679	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2761681	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3118008	0.91[ASN][1000 genomes]
rs3739606	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3780347	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4302908	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743874	0.84[ASN][1000 genomes]
rs4744133	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4744134	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744135	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479416	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479417	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479419	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479420	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479423	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020874	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7023004	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7026361	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7031567	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7043152	0.81[EUR][1000 genomes]
rs7045409	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7047089	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs710162	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs747629	0.84[ASN][1000 genomes]
rs7847929	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7850432	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7852510	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7853859	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7856204	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7860774	0.88[ASN][1000 genomes]
rs7860786	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7863234	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7863406	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7864630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7868640	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7872375	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7873932	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8067	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs927865	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9299404	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs987554	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10761161	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs10761161	OGN	cis	Nerve Tibial	GTEx

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95243600-95263800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:95246400-95267000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:95252200-95263800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:95252200-95266400	Weak transcription	NHLF	lung
6	chr9:95252400-95266200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:95252600-95269400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:95255000-95274600	Weak transcription	Liver	Liver
9	chr9:95255200-95263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:95255200-95264000	Weak transcription	Esophagus	oesophagus
11	chr9:95255400-95263200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:95255400-95263800	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:95255400-95264000	Weak transcription	Aorta	Aorta
14	chr9:95255400-95266600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:95255400-95269400	Weak transcription	Right Ventricle	heart
16	chr9:95256200-95264200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:95256600-95263200	Weak transcription	Ovary	ovary
18	chr9:95256600-95266000	Weak transcription	Fetal Lung	lung
19	chr9:95256800-95267000	Weak transcription	Fetal Stomach	stomach
20	chr9:95257400-95263400	Weak transcription	Adipose Nuclei	Adipose
21	chr9:95257600-95264000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:95257600-95266800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:95258200-95268000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:95258600-95268200	Weak transcription	Fetal Heart	heart
25	chr9:95259000-95263600	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:95259200-95263200	Weak transcription	NHEK	skin
27	chr9:95259400-95264000	Weak transcription	HSMMtube	muscle
28	chr9:95261400-95262400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:95261400-95262400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:95261400-95268200	Weak transcription	Brain Substantia Nigra	brain
31	chr9:95261600-95264800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:95261600-95265600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:95261600-95266000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:95261600-95266200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:95261600-95266200	Weak transcription	Right Atrium	heart
36	chr9:95261800-95265800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:95262000-95262400	Enhancers	Osteobl	bone
38	chr9:95262000-95263400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:95262000-95263400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:95262200-95263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:95262200-95263800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:95262200-95263800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:95262200-95264000	Weak transcription	NHDF-Ad	bronchial
44	chr9:95262200-95269800	Weak transcription	Fetal Thymus	thymus
45	chr9:95262200-95270000	Weak transcription	Brain Anterior Caudate	brain

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