Variant report

Variant	rs11795122
Chromosome Location	chr9:95257018-95257019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95227770..95231627-chr9:95254593..95257141,3	MCF-7	breast:
2	chr9:95256777..95259029-chr9:95261790..95264471,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10115290	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10116241	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10117627	0.93[ASN][1000 genomes]
rs10120329	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10121495	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123738	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10283572	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10429459	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10453241	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10514815	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1053441	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1053446	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739927	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1075397	0.82[ASN][1000 genomes]
rs10761153	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761154	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761158	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10761161	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820964	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10820969	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10820971	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10820986	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10820988	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10820990	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992291	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992322	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992340	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992347	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992365	0.81[ASN][1000 genomes]
rs1121979	0.81[EUR][1000 genomes]
rs1133908	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11789163	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11792342	0.83[EUR][1000 genomes]
rs12335553	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12338938	0.83[ASN][1000 genomes]
rs12343820	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12348488	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12353096	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1535754	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1924243	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1924244	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2007837	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025388	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2104533	0.83[ASN][1000 genomes]
rs2274966	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296666	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2296667	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516567	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2516568	0.85[EUR][1000 genomes]
rs2761679	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2761681	0.85[EUR][1000 genomes]
rs3118008	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3739606	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3780347	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4302908	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743874	0.87[ASN][1000 genomes]
rs4744133	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4744134	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744135	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744139	0.82[ASN][1000 genomes]
rs6479416	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479417	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479419	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479420	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479423	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020874	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7023004	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7026361	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7031567	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7043152	0.81[EUR][1000 genomes]
rs7045409	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7047089	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs710162	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs747629	0.87[ASN][1000 genomes]
rs7847929	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7849788	0.82[ASN][1000 genomes]
rs7850432	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7852510	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7853859	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7856204	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7860774	0.91[ASN][1000 genomes]
rs7860786	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863234	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7863406	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7864630	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868640	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869742	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872375	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7873932	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8067	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927865	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299404	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs987554	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11795122	OGN	cis	Nerve Tibial	GTEx
rs11795122	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95243600-95263800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:95246200-95261200	Weak transcription	Right Atrium	heart
4	chr9:95246400-95267000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:95252200-95258000	Weak transcription	NHDF-Ad	bronchial
6	chr9:95252200-95258400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:95252200-95263800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:95252200-95266400	Weak transcription	NHLF	lung
9	chr9:95252400-95258600	Weak transcription	HSMM	muscle
10	chr9:95252400-95261200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:95252400-95266200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:95252600-95269400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:95254800-95258000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:95255000-95274600	Weak transcription	Liver	Liver
15	chr9:95255200-95263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:95255200-95264000	Weak transcription	Esophagus	oesophagus
17	chr9:95255400-95257200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:95255400-95258800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:95255400-95263200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:95255400-95263800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:95255400-95264000	Weak transcription	Aorta	Aorta
22	chr9:95255400-95266600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:95255400-95269400	Weak transcription	Right Ventricle	heart
24	chr9:95255600-95258600	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:95255600-95260200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:95256200-95257400	Strong transcription	Adipose Nuclei	Adipose
27	chr9:95256200-95257600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:95256200-95264200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:95256400-95258600	Enhancers	Fetal Heart	heart
30	chr9:95256600-95258400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:95256600-95263200	Weak transcription	Ovary	ovary
32	chr9:95256600-95266000	Weak transcription	Fetal Lung	lung
33	chr9:95256800-95257800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:95256800-95267000	Weak transcription	Fetal Stomach	stomach
35	chr9:95257000-95257600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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