Variant report

Variant	rs10992322
Chromosome Location	chr9:95159196-95159197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10115222	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10115290	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10116241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10116813	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10117627	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10118939	0.88[CEU][hapmap]
rs10120329	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120980	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs10121495	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10123342	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[LWK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10123738	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10125474	0.92[CEU][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10429459	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10514815	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1053446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10739927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10739928	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10761147	0.81[EUR][1000 genomes]
rs10761150	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs10761151	0.82[EUR][1000 genomes]
rs10761153	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761155	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap]
rs10761156	0.81[JPT][hapmap]
rs10761158	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10761161	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761164	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10820960	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs10820961	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[LWK][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs10820964	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10820965	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10820966	0.91[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs10820967	0.83[ASW][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes]
rs10820968	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820980	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10820986	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820988	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820990	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992273	0.92[CEU][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes]
rs10992280	0.82[EUR][1000 genomes]
rs10992291	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992303	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10992304	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10992319	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10992340	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992349	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs1121978	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1121979	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1133908	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1152759	0.81[JPT][hapmap]
rs11789163	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11792342	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11794346	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs11795122	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12335553	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12336415	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs12338938	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12341817	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs12342019	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs12343820	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12348488	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12353096	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13301537	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1535754	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1535756	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1924244	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1980848	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs2007837	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025388	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2026585	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2031262	0.81[JPT][hapmap]
rs2094281	0.81[ASW][hapmap];0.88[CEU][hapmap]
rs2104533	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap]
rs2236341	0.92[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs2273862	0.92[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs2274966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2295941	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs2296666	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2296667	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs230222	0.81[JPT][hapmap]
rs2516567	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2516568	0.91[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2761679	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2761681	0.94[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2895219	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap]
rs3118008	1.00[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs331380	0.81[JPT][hapmap]
rs3739606	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3758229	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3780347	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4302908	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4743873	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs4743874	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4744133	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4744134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744135	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4744136	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744137	0.88[CEU][hapmap]
rs4744138	0.81[ASW][hapmap];0.83[CEU][hapmap]
rs4744141	0.88[CEU][hapmap]
rs6479416	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479418	0.83[EUR][1000 genomes]
rs6479419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479420	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479422	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs6479423	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7020874	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7022562	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap]
rs7023004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7024190	0.92[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs7026361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7027595	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7030920	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7031567	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7033979	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7037075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7037194	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap]
rs7040949	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs7042335	0.92[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7043152	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7045409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045572	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs710162	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs747629	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.81[ASN][1000 genomes]
rs7847929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848055	0.83[EUR][1000 genomes]
rs7848391	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs7850432	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7850528	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7852510	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7853859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860774	0.90[ASN][1000 genomes]
rs7860786	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7863234	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7863406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7864575	0.88[CEU][hapmap]
rs7864630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7865019	0.88[CEU][hapmap]
rs7867909	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7868013	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs7868640	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7869742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7872375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7873397	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs7873932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8067	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs927865	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9299403	0.83[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs9299404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299405	0.81[ASW][hapmap];0.88[CEU][hapmap]
rs968040	0.81[ASW][hapmap];0.87[CEU][hapmap]
rs987554	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs10992322	ZNF484	cis	parietal	SCAN
rs10992322	OGN	cis	parietal	SCAN
rs10992322	IPPK	cis	cerebellum	SCAN
rs10992322	ECM2	cis	cerebellum	SCAN
rs10992322	CENPP	cis	parietal	SCAN
rs10992322	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs10992322	OGN	cis	Nerve Tibial	GTEx
rs10992322	ZNF484	cis	cerebellum	SCAN
rs10992322	CENPP	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
2	chr9:95142000-95159400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:95142200-95165600	Weak transcription	Fetal Thymus	thymus
4	chr9:95145000-95163800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:95148000-95164000	Weak transcription	Adipose Nuclei	Adipose
6	chr9:95148400-95163800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:95155600-95166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:95156000-95159200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:95156200-95168200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:95156400-95164200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:95156800-95164000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:95157400-95160000	Strong transcription	Fetal Lung	lung
13	chr9:95158400-95159800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:95158600-95159800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr9:95158800-95159800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:95158800-95160200	Strong transcription	Fetal Stomach	stomach
17	chr9:95158800-95160400	Strong transcription	Ovary	ovary
18	chr9:95158800-95161600	Strong transcription	Fetal Muscle Leg	muscle

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Variant report

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