Variant report

Variant	rs4744137
Chromosome Location	chr9:95288352-95288353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95281336..95283351-chr9:95285922..95288422,3	K562	blood:
2	chr9:95279396..95281425-chr9:95286686..95288458,2	K562	blood:

Extended variants
information (count: 161 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10114912	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10114932	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10115222	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10115290	0.81[EUR][1000 genomes]
rs10116241	0.87[CEU][hapmap]
rs10116813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs10117627	0.81[EUR][1000 genomes]
rs10117680	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10118107	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10118939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124058	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10125450	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10125587	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10283572	0.87[CEU][hapmap]
rs10429459	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs10453241	0.88[CEU][hapmap]
rs10491804	0.92[CEU][hapmap]
rs10514815	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1053441	0.88[CEU][hapmap]
rs1053446	0.88[CEU][hapmap]
rs1075397	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761154	0.88[CEU][hapmap]
rs10761155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10761158	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10761160	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761164	0.85[CEU][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820967	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10820968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820969	0.88[CEU][hapmap]
rs10820971	0.88[CEU][hapmap]
rs10820980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10820986	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs10820989	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820990	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs10820994	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821008	0.96[CEU][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992304	0.81[EUR][1000 genomes]
rs10992322	0.88[CEU][hapmap]
rs10992347	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992365	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992366	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992393	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs10992457	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1121978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1121979	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11788511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11788523	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11791001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11791339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11791805	1.00[ASN][1000 genomes]
rs11792019	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11792916	0.93[ASN][1000 genomes]
rs11793727	0.98[ASN][1000 genomes]
rs11794346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12335553	0.85[AFR][1000 genomes]
rs12336415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12336884	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12338938	0.84[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12341817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12342019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12343820	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs13286566	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13301492	0.80[EUR][1000 genomes]
rs13301537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13301652	0.83[EUR][1000 genomes]
rs1380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1535754	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1535756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1924243	0.81[EUR][1000 genomes]
rs1924244	0.83[EUR][1000 genomes]
rs1980848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2025388	0.88[CEU][hapmap]
rs2026585	0.85[CEU][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2094281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104533	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2274966	0.88[CEU][hapmap]
rs2296666	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs2296667	0.88[CEU][hapmap]
rs2296669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2516567	0.88[CEU][hapmap]
rs2516568	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs2761677	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2761678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2761681	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs2895219	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3739606	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs3780347	0.85[EUR][1000 genomes]
rs3927488	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743874	0.84[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743875	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs4744133	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs4744134	0.88[CEU][hapmap]
rs4744135	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4744136	0.88[CEU][hapmap]
rs4744138	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744139	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62572543	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479419	0.88[CEU][hapmap]
rs6479422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479423	0.85[EUR][1000 genomes]
rs7020104	0.95[CEU][hapmap]
rs7020874	0.84[CEU][hapmap]
rs7022562	0.91[CEU][hapmap]
rs7023004	0.88[CEU][hapmap]
rs7026361	0.88[CEU][hapmap]
rs7027595	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7029879	0.93[ASN][1000 genomes]
rs7029939	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7030920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7031567	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7033979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7037075	0.88[CEU][hapmap]
rs7037194	0.91[CEU][hapmap]
rs7042335	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7043152	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7043984	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7045409	0.88[CEU][hapmap]
rs7045572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7047089	0.88[CEU][hapmap]
rs724102	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs747628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747629	0.88[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7847534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847929	0.88[CEU][hapmap]
rs7848391	0.84[CEU][hapmap]
rs7848399	0.85[JPT][hapmap]
rs7848472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7849788	0.82[EUR][1000 genomes]
rs7849927	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7850432	0.87[CEU][hapmap]
rs7850528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7852698	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7853859	0.88[CEU][hapmap]
rs7860786	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7863049	0.82[EUR][1000 genomes]
rs7864575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7864630	0.88[CEU][hapmap]
rs7865019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7868013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7869521	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7869742	0.88[CEU][hapmap]
rs7872610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7872644	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7873390	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7874151	0.98[ASN][1000 genomes]
rs8067	0.88[CEU][hapmap]
rs927865	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs9299404	0.88[CEU][hapmap]
rs9299405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968040	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987554	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4744137	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95269800-95298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:95276000-95296600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:95279600-95290400	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:95280800-95290400	Weak transcription	Aorta	Aorta
5	chr9:95280800-95296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:95281400-95295800	Weak transcription	Liver	Liver
7	chr9:95281800-95290400	Weak transcription	Adipose Nuclei	Adipose
8	chr9:95284000-95296400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:95286000-95290400	Weak transcription	Left Ventricle	heart
10	chr9:95287000-95296600	Weak transcription	Ovary	ovary
11	chr9:95287200-95293000	Weak transcription	Fetal Lung	lung
12	chr9:95287400-95292400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:95288000-95288400	Enhancers	K562	blood

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