Variant report

Variant	rs1121978
Chromosome Location	chr9:95140351-95140352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95128615..95130359-chr9:95138980..95141028,2	MCF-7	breast:
2	chr9:95138915..95141758-chr9:95143289..95145635,2	K562	blood:

Extended variants
information (count: 164 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10114912	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10114932	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10115222	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10115290	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10116241	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs10116813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117627	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10118939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10120980	0.94[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs10123342	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10125474	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10283572	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs10429459	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs10453241	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10514815	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs1053441	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs1053446	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10739927	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs10739928	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10761147	1.00[ASN][1000 genomes]
rs10761150	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10761151	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10761154	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10761155	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761158	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10761160	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761164	0.88[CEU][hapmap]
rs10820960	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10820961	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs10820964	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs10820965	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10820966	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10820967	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10820968	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820969	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10820971	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs10820980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10820986	0.84[CEU][hapmap]
rs10820990	0.84[CEU][hapmap]
rs10820994	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992273	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10992280	1.00[ASN][1000 genomes]
rs10992303	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10992304	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992319	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992322	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10992347	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10992349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992366	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1121979	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11788523	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790258	0.85[CHD][hapmap]
rs11791001	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs11791339	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs11792019	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11792342	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11794346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12336415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12336884	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12338938	0.87[CEU][hapmap]
rs12341817	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12342019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12343820	0.87[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13301537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1535754	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1535756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1924243	0.80[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1924244	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1980848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025388	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2026585	0.88[CEU][hapmap]
rs2094281	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2104533	0.88[ASW][hapmap];0.88[CEU][hapmap]
rs2151618	1.00[ASN][1000 genomes]
rs2236341	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs2273862	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs2274966	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs2295941	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2296666	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2296667	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs2516567	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2516568	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2761677	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2761681	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2895219	0.88[ASW][hapmap];0.88[CEU][hapmap]
rs3739606	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3758229	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs3780345	0.80[ASN][1000 genomes]
rs3780347	0.84[AFR][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs4743873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743874	0.87[CEU][hapmap]
rs4744133	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4744134	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs4744135	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4744136	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4744137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744138	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744141	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62572543	0.80[EUR][1000 genomes]
rs6479417	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs6479418	1.00[ASN][1000 genomes]
rs6479419	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479422	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479423	0.84[AFR][1000 genomes]
rs7020874	0.83[ASW][hapmap];0.84[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7022562	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs7023004	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7024190	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs7026361	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7027595	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7029879	0.83[ASN][1000 genomes]
rs7029939	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7030920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031567	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7033979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7037075	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7037194	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs7040949	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs7042335	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7043152	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045409	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7045572	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047089	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs710162	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs747628	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs747629	0.83[ASW][hapmap];0.88[CEU][hapmap]
rs7847534	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7847929	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7848055	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7848391	0.84[CEU][hapmap]
rs7848472	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs7850432	0.83[ASW][hapmap];0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7850528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7853859	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7860786	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7863406	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7864575	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7864630	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7865019	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7867909	1.00[ASN][1000 genomes]
rs7868013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7869742	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7872375	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs7872610	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7873932	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs8067	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs927865	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9299403	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9299404	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs9299405	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs968040	0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs987553	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1121978	ZNF484	cis	cerebellum	SCAN
rs1121978	CENPP	cis	Esophagus Muscularis	GTEx
rs1121978	CENPP	cis	parietal	SCAN
rs1121978	ZNF484	cis	parietal	SCAN
rs1121978	OMD	cis	cerebellum	SCAN
rs1121978	CENPP	cis	cerebellum	SCAN
rs1121978	CENPP	cis	Muscle Skeletal	GTEx

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95128000-95141400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:95128400-95146600	Weak transcription	NHEK	skin
3	chr9:95129400-95141400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:95132200-95141200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:95135200-95149800	Weak transcription	Primary B cells from cord blood	blood
6	chr9:95135600-95148000	Weak transcription	Ovary	ovary
7	chr9:95135800-95141200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:95137600-95141000	Weak transcription	Dnd41	blood
9	chr9:95137800-95143600	Weak transcription	Left Ventricle	heart
10	chr9:95138000-95152400	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:95138800-95141200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
13	chr9:95139200-95141200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:95139400-95140400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:95139600-95140400	Enhancers	Fetal Stomach	stomach
16	chr9:95139600-95140600	Enhancers	Fetal Lung	lung
17	chr9:95139600-95142000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:95139600-95142000	Enhancers	Fetal Intestine Large	intestine
19	chr9:95139600-95142200	Enhancers	Fetal Thymus	thymus
20	chr9:95139800-95140600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:95139800-95141000	Weak transcription	Thymus	Thymus
22	chr9:95139800-95142600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr9:95139800-95143000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:95140000-95141000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:95140000-95141200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:95140000-95141200	Weak transcription	NH-A	brain
27	chr9:95140200-95140600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:95140200-95140600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:95140200-95140600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr9:95140200-95140600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr9:95140200-95140600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:95140200-95140600	Enhancers	K562	blood
33	chr9:95140200-95140800	Enhancers	H9 Cell Line	embryonic stem cell
34	chr9:95140200-95140800	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr9:95140200-95141400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr9:95140200-95141600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:95140200-95141800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:95140200-95142600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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