Variant report

Variant	rs2151618
Chromosome Location	chr9:94985143-94985144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94983419..94986395-chr9:94989687..94991728,4	K562	blood:
2	chr9:94982687..94985411-chr9:95009602..95012209,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10115222	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116813	1.00[ASN][1000 genomes]
rs10120980	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10121495	0.82[EUR][1000 genomes]
rs10123342	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125474	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283572	0.82[EUR][1000 genomes]
rs10739927	0.85[EUR][1000 genomes]
rs10739928	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761147	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761150	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761151	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761153	0.83[EUR][1000 genomes]
rs10761155	0.95[ASN][1000 genomes]
rs10761160	0.95[ASN][1000 genomes]
rs10820960	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820961	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820964	0.86[EUR][1000 genomes]
rs10820965	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820966	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820967	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820968	1.00[ASN][1000 genomes]
rs10820969	0.83[EUR][1000 genomes]
rs10992273	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992280	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992291	0.86[EUR][1000 genomes]
rs10992303	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992304	1.00[ASN][1000 genomes]
rs10992319	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992349	0.93[ASN][1000 genomes]
rs1121978	1.00[ASN][1000 genomes]
rs1121979	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1133908	0.85[EUR][1000 genomes]
rs11791001	0.83[ASN][1000 genomes]
rs11792019	0.95[ASN][1000 genomes]
rs11792342	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792916	0.83[ASN][1000 genomes]
rs12336415	0.95[ASN][1000 genomes]
rs12342019	0.95[ASN][1000 genomes]
rs12353096	0.86[EUR][1000 genomes]
rs13301537	0.95[ASN][1000 genomes]
rs1380	0.83[ASN][1000 genomes]
rs1535756	0.95[ASN][1000 genomes]
rs2025388	0.84[EUR][1000 genomes]
rs2236341	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273862	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2295941	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516568	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2761677	0.98[ASN][1000 genomes]
rs2761678	0.82[ASN][1000 genomes]
rs2761681	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758229	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780345	0.80[ASN][1000 genomes]
rs3824424	0.80[ASN][1000 genomes]
rs6479416	0.85[EUR][1000 genomes]
rs6479417	0.85[EUR][1000 genomes]
rs6479418	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479419	0.83[EUR][1000 genomes]
rs6479420	0.82[EUR][1000 genomes]
rs6479422	0.95[ASN][1000 genomes]
rs7020874	0.83[EUR][1000 genomes]
rs7023004	0.83[EUR][1000 genomes]
rs7024190	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026361	0.81[EUR][1000 genomes]
rs7027595	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029879	0.83[ASN][1000 genomes]
rs7030920	1.00[ASN][1000 genomes]
rs7033979	0.95[ASN][1000 genomes]
rs7040949	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042335	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043152	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045451	0.85[EUR][1000 genomes]
rs7045572	1.00[ASN][1000 genomes]
rs7047089	0.82[EUR][1000 genomes]
rs710162	0.86[EUR][1000 genomes]
rs7848055	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850432	0.83[EUR][1000 genomes]
rs7850528	0.95[ASN][1000 genomes]
rs7856204	0.80[EUR][1000 genomes]
rs7863406	0.85[EUR][1000 genomes]
rs7867909	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872375	0.85[EUR][1000 genomes]
rs7873397	0.95[ASN][1000 genomes]
rs7873932	0.85[EUR][1000 genomes]
rs9299403	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2151618	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94973800-94990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94974000-94999000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:94982800-94985200	Strong transcription	Primary B cells from cord blood	blood
4	chr9:94982800-94985200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:94982800-94985200	Strong transcription	Brain Germinal Matrix	brain
6	chr9:94982800-94986400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:94982800-94986400	Strong transcription	Brain Hippocampus Middle	brain
8	chr9:94982800-94986600	Strong transcription	Placenta Amnion	Placenta Amnion
9	chr9:94982800-94986800	Strong transcription	Small Intestine	intestine
10	chr9:94982800-94987400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:94982800-94988200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:94982800-94988400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:94982800-94988400	Strong transcription	Aorta	Aorta
14	chr9:94982800-94988400	Strong transcription	Esophagus	oesophagus
15	chr9:94982800-94988400	Strong transcription	Pancreas	Pancrea
16	chr9:94982800-94988600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:94982800-94988600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:94982800-94988600	Strong transcription	Adipose Nuclei	Adipose
19	chr9:94982800-94988600	Strong transcription	Fetal Lung	lung
20	chr9:94982800-94988600	Strong transcription	HMEC	breast
21	chr9:94982800-94988800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr9:94982800-94988800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:94982800-94988800	Strong transcription	A549	lung
24	chr9:94982800-94988800	Strong transcription	HSMM	muscle
25	chr9:94982800-94989000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:94982800-94989000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:94982800-94989000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:94982800-94989000	Strong transcription	Primary T cells from cord blood	blood
29	chr9:94982800-94989000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr9:94982800-94989000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:94982800-94989000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:94982800-94989000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:94982800-94989000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:94982800-94989000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr9:94982800-94989000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:94982800-94989000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:94982800-94989000	Strong transcription	Brain Angular Gyrus	brain
38	chr9:94982800-94989000	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr9:94982800-94989000	Strong transcription	Fetal Brain Female	brain
40	chr9:94982800-94989000	Strong transcription	Placenta	Placenta
41	chr9:94982800-94989000	Strong transcription	Gastric	stomach
42	chr9:94982800-94989000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr9:94982800-94989000	Strong transcription	Rectal Smooth Muscle	rectum
44	chr9:94982800-94989000	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:94982800-94989000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr9:94982800-94989000	Strong transcription	Dnd41	blood
47	chr9:94982800-94989000	Strong transcription	Hela-S3	cervix
48	chr9:94982800-94989000	Strong transcription	HSMMtube	muscle
49	chr9:94982800-94989000	Strong transcription	HUVEC	blood vessel
50	chr9:94982800-94989000	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links